Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028994.1 Length=4273 Score E Sequences producing significant alignments: (Bits) Value seq87144 181 3e-42 seq129457 120 8e-24 seq207554 104 6e-19 seq61792 93.3 1e-15 >seq87144 Length=4065 Score = 181 bits (200), Expect = 3e-42 Identities = 520/794 (65%), Gaps = 22/794 (3%) Strand=Plus/Plus Query 849 TGCAGATTTATCTGTAGCAACTGCGGCAACAATTAATCAATTACGTCAATCATTTCAGAT 908 ||| ||||| || | || |||||||| || ||||| || | || ||| | || || | Sbjct 2033 TGCTGATTTGTCAGACGCTACTGCGGCTACTATTAACGAACTTCGACAAGCGTTCCAAGT 2092 Query 909 TCAAAAACTTCTTGAAAGGGATGCCCGTGGCGGTACTCGTTATACTGAAATTATACGCTC 968 ||| || | ||| | || ||||||||||| ||||| |||| || |||| || Sbjct 2093 ACAACGCCTCTTAGAACGTGACGCCCGTGGCGGCACTCGATATATCGAGCTTATTAAATC 2152 Query 969 ACATTTTGGTGTTATTTCTCCTGATGCTCGCTTACAGCGTCCCGAGTACATCGGGGGTGG 1028 ||||| ||||| ||||||||| || || ||||| || || || ||| | || ||||| Sbjct 2153 TCATTTCGGTGTCTCTTCTCCTGACGCACGATTACAACGCCCAGAATACCTTGGCGGTGG 2212 Query 1029 ATCAACCAATATTAATATTAATCCGATCGCTCAGACATCGGGTAGTAATGCTAGTGGAAC 1088 ||||| | || |||| ||| | | || ||| | || | |||| | Sbjct 2213 CTCAACTCCGGTGAACATTACACCGGTAACACAACAATCTGCTACTGATGCAA------- 2265 Query 1089 TACTACCCCTATGGGCACACTTGCTGCTATGGGTACTGCCTTGGCTCATAATCATGGCTT 1148 | ||||| ||| | ||||| ||| | ||||| ||| ||||||||||||||| Sbjct 2266 --CCACCCCACAGGGTAATCTTGCAGCTTTCGGTACAGCCAATCTTCATAATCATGGCTT 2323 Query 1149 TACTTACTCAGCTACTGAACATGGTGTCATTCTGGGATTAGTATCTGTACGTGCCGATCT 1208 ||| | ||| || ||||| || | || | || | || || || ||||| || || Sbjct 2324 TACAAAATCATTCACCGAACACTGTATTATAATCGGTCTGGTCTCCGTTCGTGCAGACCT 2383 Query 1209 TACATACCAGCAAGGATTGCAGCGTATGTGGAGTCGTTCAACACGATACGATTTTTATTT 1268 || || || ||||| | | ||||||| |||| || || ||||| || |||| Sbjct 2384 AACTTATCAACAAGGCCTTAACCGTATGTTCTCTCGTAGCACTCGCTACGACTTCTATTG 2443 Query 1269 CCCAGC-ATTTGCAACCTTAGGTGAACAAGCCATACTCAATAAGGAAATTTATGTTACAG 1327 || || | | ||||| || |||||| |||| || || || ||||| | || | Sbjct 2444 GCCTGCTCTATCTCACCTT-GGCGAACAATCCATTCTTAACAAAGAAATCTTTGCCGATG 2502 Query 1328 GTAGCTCTGGGGATAATGATGTATTTGGTTATCAAGAACGCTGGGCAGAATACCGATATT 1387 ||| |||| ||| | ||||| || || ||||||||||| | |||||||| || ||| Sbjct 2503 GTACTTCTGCTGATGACGATGTTTTCGGCTATCAAGAACGATATGCAGAATATCGTTATA 2562 Query 1388 ATCCTAGCCGCATTTCAAGTTTGTTCCGTTCTACTGCTGCTGGAACTATTGATGCCTGGC 1447 | ||| | |||| | | || || |||| |||||||| | | ||||| |||| Sbjct 2563 AACCTTCCATCATTACTTCACTCTTTCGATCTAATGCTGCTGCTTCACTCGATGCTTGGC 2622 Query 1448 ATCTTGCACAAAAATTCACTGCTACACCTACGTTGAATACAACGTTTATACAAGACACAC 1507 || | | ||| | ||| | ||| ||| | | ||| | | ||||| |||| | | Sbjct 2623 ATTTATCCCAAGACTTCGCGGCTCTCCCTGCTCTCAATGCTTCATTTATTGAAGATAATC 2682 Query 1508 CACCAGTGAGTCGAGTAGTAGCAGTTGGAGCAGCTGCTAACGGACAACAATTTATTTTTG 1567 |||| ||||| | ||| ||| || | | | | | || |||||||| || | Sbjct 2683 CACC----TGTCGA-TCGTA----TTGTCGCGGTTCCAACTGAACCCCAATTTATCTTCG 2733 Query 1568 A-TAGCTTTTTTGATTGTAAAAAAGCACGACCAATGCCAATGTACAGCGTACCTGGCTTA 1626 | | | | | ||| | | || |||||||| ||||| ||||| |||||| Sbjct 2734 ATTCTCACATGTCATT-ACGATGTGTCCGTCCAATGCCTGTGTACTCAGTACCCGGCTTA 2792 Query 1627 ATCGATCATTTCTA 1640 |||||||||||||| Sbjct 2793 ATCGATCATTTCTA 2806 Score = 111 bits (122), Expect = 4e-21 Identities = 339/518 (65%), Gaps = 22/518 (4%) Strand=Plus/Plus Query 145 TTGCCAGGCGATACTTTCCGCCTTAATATGACGGCATTTGCCCGTTTAGCAACTCCTCTT 204 ||||| || ||||| || ||||||||||||||||| |||||| | || || || || Sbjct 1380 TTGCCCGGAGATACCTTTAAACTTAATATGACGGCATTCGCCCGTCTTGCCACACCCATT 1439 Query 205 TATCCAATTATGGATAATATGCACTTAGATTCATTCTTTTTCTTTGTCCCAAATAGATTA 264 |||| || |||||||||||| || | || | || |||| ||| |||| | ||| Sbjct 1440 AATCCCATAATGGATAATATGTACATGGACACGCATTTCTTCTCTGTACCAATGCGTTTA 1499 Query 265 ATTTGGAACAATTGGCAAAAATTTATGGGTCAACAAG-CGAACCCTGATAGTTCGATTTC 323 | ||| | |||||||||||||| | || ||||| ||| || || | ||| ||| Sbjct 1500 TTATGGGATAATTGGCAAAAATTCAATGGAGAACAAATCGACCCAGGAGA-TTCCATTGA 1558 Query 324 TTTTGTTGTACC--CCAACA--AGTATCACCTGCTGGTGGATACGCTATTGGATCATTAC 379 || | | | || | | || ||| | ||| | ||| || || || || | Sbjct 1559 TTATTTAATTCCTACTATCACTAGTC-CTCCTATTATTGGCTATGCCGAAGGCTCTATGT 1617 Query 380 AAGATTACATGGGTTTACCTACTGTTGGTCAAGTAGGTGCTGGTAATACAGTAAGCCATT 439 | |||||| | || | || || |||| | | ||| | | || | Sbjct 1618 ATGATTACTTCGGAATCCCAAC-------CAAG-----GTTCCTAACCTTGAA---CACT 1662 Query 440 GTGCTTTTTGGCCACGTGCTTACAACCTTATATATAACGAGTGGTTTAGAGATGAAAATT 499 |||| ||| || || || || || | | ||||| ||||| | || ||||| | Sbjct 1663 CTGCTCTTTATAACCGCGCATATAATCTCGTCTGGAACGAATGGTTCCGTGACGAAAACT 1722 Query 500 TACAAAACTCTGTTACCGTTGATCTTGGTGATGGCCCTGATACTGTTACTAACTATACTT 559 ||||| ||||| | | ||| | |||||||| |||||||| || |||| ||| Sbjct 1723 TACAAGACTCTCTACCAGTTCCACGCGGTGATGGTCCTGATACATCAACCGACTACACTC 1782 Query 560 TATTACGACGTGGAAAACGAAAAGATTACTTTACTTCTGCCCTTCCTTGGCCTCAAAAAG 619 | ||| || || ||||| | ||||| || || ||||| ||||| ||||||||||||| Sbjct 1783 TTCAACGTCGAGGCAAACGCCACGATTATTTCACATCTGCACTTCCATGGCCTCAAAAAG 1842 Query 620 GTACTTCTGTAACGTTACCATTAGGAACTTCTGCACCA 657 | | ||||| ||||| ||||| ||| | || ||| Sbjct 1843 GCGACGCAGTAACATTACCTTTAGGTACTACCGCTCCA 1880 >seq129457 Length=619 Score = 120 bits (132), Expect = 8e-24 Identities = 305/457 (67%), Gaps = 19/457 (4%) Strand=Plus/Minus Query 166 CTTAATATGACGGCATTTGCCCGTTTAGCAACTCCTCTTTATCCAATTATGGATAATATG 225 |||||||||||||||||||| ||| | || || || | |||| || ||||||||| | Sbjct 612 CTTAATATGACGGCATTTGCACGTCTTGCCACACCCATAAATCCCATCATGGATAATCTA 553 Query 226 CACTTAGATTCATTCTTTTTCTTTGTCCCAAATAGATTAATTTGGAACAATTGGCAAAAA 285 | | ||| | |||||||| ||| || | | || | ||| |||||||||||||| Sbjct 552 TATATGGATACGCACTTTTTCTCTGTGCCGATCCGTCTACTATGGGACAATTGGCAAAAA 493 Query 286 TTTATGGGTCAAC-AAGCGAACCCTGATAGTTCGATTTCTTTTGTTGTACC-CCAACAAG 343 || | ||| ||| || ||| ||| | | ||| ||| | | |||| ||| | Sbjct 492 TTCAATGGTGAACAAATCGATCCCGGCGA-TTCCATTGACTACTTAATACCTACAATCA- 435 Query 344 TATCACCTGCTGGTGGATACGCTATTGGATCATTACAAGATTACATGGGTTTACCTACTG 403 | | |||||||| || ||||| || || | |||||| | || |||| ||| Sbjct 434 CAGCTCCTGCTGGCGGCTACGCAGAAGGCTCTATGTTTGATTACTTTGGCATACCGACT- 376 Query 404 TTGGTCAAGTAGGTGCTGGTAATACAGTAAGCCATTGTGCTTTTTGGCCACGTGCTTACA 463 || || ||||| | | | || | ||| ||||| | || |||| Sbjct 375 ------AA--AGTCGCTGG-----CCTTGA-ACACTCTGCCCTTTGGAACAGAGCCTACA 330 Query 464 ACCTTATATATAACGAGTGGTTTAGAGATGAAAATTTACAAAACTCTGTTACCGTTGATC 523 | ||| | | ||||| ||||| | || ||||| ||||| ||||| |||| || || Sbjct 329 ATCTTGTCTGGAACGAATGGTTCCGTGACGAAAACCTACAAGACTCTCTTACTGTCTCTC 270 Query 524 TTGGTGATGGCCCTGATACTGTTACTAACTATACTTTATTACGACGTGGAAAACGAAAAG 583 ||||||||| ||||| | | || |||| ||| || ||| || || ||||| | | Sbjct 269 GTGGTGATGGTCCTGACCCAGACACCGACTACACTCTACAACGTCGCGGCAAACGCCACG 210 Query 584 ATTACTTTACTTCTGCCCTTCCTTGGCCTCAAAAAGG 620 | || ||||| ||||| ||||| ||||| |||||||| Sbjct 209 ACTATTTTACCTCTGCACTTCCATGGCCACAAAAAGG 173 >seq207554 Length=4125 Score = 104 bits (114), Expect = 6e-19 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 469 ATATATAACGAGTGGTTTAGAGATGAAAATTTACAAAACTCTGTTACCGTTGATCTTGGT 528 ||||||||||| |||||||||||||||||| | |||||| || || || || || Sbjct 2725 ATATATAACGACTGGTTTAGAGATGAAAATCTCCAAAACAGCGTAACAGTCGACAAAGGA 2666 Query 529 GATGGCCCTGATACTGTTACTAACTATACTTTATTACGACGTGGAAAACGAAAAGATTAC 588 || || || ||||| | | ||| ||||| || | | | || ||| || | ||||| Sbjct 2665 GACGGACCAGATACAGCAAGTAATTATACCTTGCTGAAAAGAGGTAAAAGACACGATTAT 2606 Query 589 TTTACTTCTGCCCTTCCTTGGCCTCAAAAAGGTACTTCTGTAACGTTACCATTAGGAACT 648 || || ||| | |||||||| |||||||| | ||||| ||||||||||| Sbjct 2605 TTCACAAGTGCTTTACCTTGGCCACAAAAAGGCGACGCAGTAACATTACCATTAGGCGGA 2546 Query 649 TCTGCACCAGTA-TATGGTACTGGTAGAACAATTGGTGTATCTAATGGATCAGG 701 ||||||||||| || | || |||| || || || | |||||||||||| Sbjct 2545 ACTGCACCAGTAATAGGCGAC-GGTACTACTATGGGATTCAGTAATGGATCAGG 2493 >seq61792 Length=4143 Score = 93.3 bits (102), Expect = 1e-15 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 1195 GTACGTGCCGATCTTACATACCAGCAAGGATTGCAGCGTATGTGGAGTCGTTCAACACGA 1254 ||||| || || || |||||||| ||||| || | | |||||||| | |||||| Sbjct 2321 GTACGCGCTGACCTAACATACCAACAAGGCATGAACAGAATGTGGAGCAGACAAACACGC 2380 Query 1255 TACGATTTTTATTTCCCAGCATTTGCAACCTTAGGTGAACAAGCCATACTCAATAAGGAA 1314 ||||||||||| | || ||| |||| | | || |||||| | ||||||| || ||| Sbjct 2381 TACGATTTTTACTGGCCCGCACTTGCCAATATCGGCGAACAATCAGTACTCAACAAAGAA 2440 Query 1315 ATTTATGTTACAGGTAGCTCTGGGGATAATGATGTATTTGGTTATCAAGAACGCTGGGCA 1374 || || || ||||| || | ||| | || ||| || || |||||||| | || Sbjct 2441 ATATACTTTCAAGGTACGTCAGACGATGACGAAACATTCGGCTACCAAGAACGATATGCC 2500 Query 1375 GAATACCGATA 1385 |||||||| || Sbjct 2501 GAATACCGCTA 2511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13518789588720