Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_030458.1 Length=5016 Score E Sequences producing significant alignments: (Bits) Value seq87144 165 3e-37 >seq87144 Length=4065 Score = 165 bits (182), Expect = 3e-37 Identities = 329/477 (69%), Gaps = 13/477 (3%) Strand=Plus/Plus Query 3526 CGAACACGGCGTTGTTATTGGTCTTTGCTCTGTTCGAGCCGACCTTGAATATCAGCAGGG 3585 ||||||| | || | || ||||| ||| ||||| || ||||| ||||| || || Sbjct 2339 CGAACACTGTATTATAATCGGTCTGGTCTCCGTTCGTGCAGACCTAACTTATCAACAAGG 2398 Query 3586 TCTTAATCGGATGTGGTCGCGTAGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCAAA 3645 ||||| || |||| || ||||| || ||||| ||||||||||||||||| || | | Sbjct 2399 CCTTAACCGTATGTTCTCTCGTAGCACTCGCTACGACTTCTATTGGCCTGCTCTATCTCA 2458 Query 3646 TCTTGGTGAACAGGCCGTGCTTAACAAAGAGATTTATGCCGATTCGACCGACGGCAAGGA 3705 ||||| ||||| || | ||||||||||| || | |||||| | | | | || || Sbjct 2459 CCTTGGCGAACAATCCATTCTTAACAAAGAAATCTTTGCCGA-TGGTACTTCTGC--TGA 2515 Query 3706 TGATGAGGTTTTTGGCTATCAAGA--GAGGTGGAGCGAGTATCGCTATAAGCCCTCTATG 3763 ||| || ||||| ||||||||||| || || | || ||||| ||||| || || || Sbjct 2516 TGACGATGTTTTCGGCTATCAAGAACGATATGCA--GAATATCGTTATAAACCTTCCATC 2573 Query 3764 ATTACTGGCAAGC-TGCGTTCTAATGACCCTCAGTCTCTCGATGTTTGGCATTTGGCTCA 3822 |||||| || | | || ||||||| || || ||||||| ||||||||| | || Sbjct 2574 ATTACT-TCACTCTTTCGATCTAATGCTGCTGCTTCACTCGATGCTTGGCATTTATCCCA 2632 Query 3823 AAATTTCATCGAGCGTCCTACCCTCTCGTCTGATTTCATTAAAGACGCTCCGCCTATTAA 3882 | | ||| | | ||| | ||| || || ||| |||| ||| ||| | | Sbjct 2633 AGACTTCGCGGCTCTCCCTGCTCTCAATGCTTCATTTATTGAAGATAATCCACCTGTCGA 2692 Query 3883 GCGTGTTTTGGCCGTGCAGGATGAACCCGAGTTCGTTTGCGATT-TC-CATTTCATTTGT 3940 ||| || | || || | ||||||| | || | | ||||| || ||| ||||| Sbjct 2693 TCGTATTGTCGCGGTTCCAACTGAACCCCAATTTATCTTCGATTCTCACATGTCATT--A 2750 Query 3941 AAATGTGCTCGTCCAATGCCCGTGTATTCAGTCCCTGGTTTGATTGACCATCACTAA 3997 ||||| ||||||||||| ||||| ||||| || || || || || ||| |||| Sbjct 2751 CGATGTGTCCGTCCAATGCCTGTGTACTCAGTACCCGGCTTAATCGATCATTTCTAA 2807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15888884129640