Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_030472.1 Length=4851 Score E Sequences producing significant alignments: (Bits) Value seq87144 132 1e-27 >seq87144 Length=4065 Score = 132 bits (146), Expect = 1e-27 Identities = 388/583 (67%), Gaps = 30/583 (5%) Strand=Plus/Plus Query 3127 CTATTAACGACCTTCGTACTGCTTTTCAAATGCAGCG--TCTTAAGGAGCGTGACGCTCG 3184 |||||||||| ||||| || || ||| | || || ||||| || |||||||| || Sbjct 2062 CTATTAACGAACTTCGACAAGCGTTCCAAGTACAACGCCTCTTA--GAACGTGACGCCCG 2119 Query 3185 CGGTGGAACTCGTTATACTGAAATTCTTCGTGCGCATTTTGGCGTTGTTTCGCCTGATAG 3244 || || ||||| |||| || || || | ||||| || || ||| ||||| | Sbjct 2120 TGGCGGCACTCGATATATCGAGCTTATTAAATCTCATTTCGGTGTCTCTTCTCCTGAC-G 2178 Query 3245 TAGGCTT-CAGCGTCCAGAATATCTTGGCGGAGGTGAAATCCCGCTTATCGTCTCGTCTG 3303 | | || || || |||||||| |||||||| || || ||| | | | | | | | Sbjct 2179 CACGATTACAACGCCCAGAATACCTTGGCGGTGGCTCAACTCCGGTGAACATTACACCGG 2238 Query 3304 TTCCGCAGACCTCTTCTACCGACGCTACAACTCCGCAAGGAAATCTTGCTGCCTATTCTG 3363 | | || ||| |||| || || || || || || || |||||||| || | || | Sbjct 2239 TAACACAACAATCTGCTACTGATGCAACCACCCCACAGGGTAATCTTGCAGCTT--TCGG 2296 Query 3364 TTTTT--AGTGGGCGAAATACTTGTCGTTGGACGAAGTCTTTTGTTGAGCATGGCGTTGT 3421 | | | | ||| | || | || || || || || || || | || | Sbjct 2297 TACAGCCAATCTTCATAAT-CATGGCTTT--ACAAAATCATTCACCGAACACTGTATTAT 2353 Query 3422 TATAGGTCTATGCTCTGTTCGTGCAGACCTAGAATATCAGCAGGGTCTTAATCGGATGTG 3481 || ||||| ||| ||||||||||||||| ||||| || || ||||| || |||| Sbjct 2354 AATCGGTCTGGTCTCCGTTCGTGCAGACCTAACTTATCAACAAGGCCTTAACCGTATGTT 2413 Query 3482 GTCGCGTAGAACGCGTTATGATTTCTATTGGCCCGCTCTTGCTAATCTTGGTGAACAGGC 3541 || ||||| || || || || ||||||||||| ||||| || | ||||| ||||| | Sbjct 2414 CTCTCGTAGCACTCGCTACGACTTCTATTGGCCTGCTCTATCTCACCTTGGCGAACAATC 2473 Query 3542 TGTGCTTAATAAGGAACTCTATGCCGATTCTGCCGATGGGAAGGACGATGACGTTTTTGG 3601 | ||||| || ||| ||| ||||||| | | || | |||||| ||||| || Sbjct 2474 CATTCTTAACAAAGAAATCTTTGCCGATGGTACTTCTGCTGATGACGAT---GTTTTCGG 2530 Query 3602 TTATCAAGA--GAGGTGGAGCGAGTATCGCTATAAGCCCTCTATGATTACAGGTAAAC-- 3657 |||||||| || || | || ||||| ||||| || || || ||||| | || Sbjct 2531 CTATCAAGAACGATATGCA--GAATATCGTTATAAACCTTCCATCATTAC---TTCACTC 2585 Query 3658 -TTCGTTCTAATGACCCGCAG--TCTCTTGATGTTTGGCATTT 3697 |||| ||||||| | || | || || |||| ||||||||| Sbjct 2586 TTTCGATCTAATG--CTGCTGCTTCACTCGATGCTTGGCATTT 2626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15362550887040