Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_030476.1 Length=5184 Score E Sequences producing significant alignments: (Bits) Value seq207554 78.8 3e-11 >seq207554 Length=4125 Score = 78.8 bits (86), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 2786 TATGAAAAAGATGCCAGAGGTGGAACGAGATATATTGAATCAAT--AAAGTCTCACTTTG 2843 ||||||||||| || ||||||||||| ||||||| ||| ||| |||||| |||||| Sbjct 2278 TATGAAAAAGACGCAAGAGGTGGAACAAGATATACAGAAGTAATTCAAAGTC--ACTTTG 2221 Query 2844 GAGTTACTTCTCCTGATGCAAGGCTGCAGAGACCTGAGTACCTCGGTGG 2892 ||||||| || || || || || | || ||||| || || || || || Sbjct 2220 GAGTTACATCACCAGACGCTAGATTACAAAGACCAGAATATCTAGGCGG 2172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16424787067560