Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq2746659 1472 0.0 >seq2746659 Length=5386 Score = 1472 bits (1632), Expect = 0.0 Identities = 2071/2881 (72%), Gaps = 66/2881 (2%) Strand=Plus/Plus Query 805 CCGCTTAAAGGATTTCTATGATAATCCCAATGCTCTTCGTGACTACTTCCGTGATATTGG 864 ||| ||| ||| || |||||||||||||||||| | |||||||| || ||||||||||| Sbjct 1 CCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGG 60 Query 865 TCGTATGGTGCTTACTGCCGAAGGTCGCTCGGTGCATGACTCATCTTCCGACTGCTATCA 924 ||||||||| ||| ||||||| |||||| || |||| ||| ||||||||||||| Sbjct 61 TCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCA 120 Query 925 GTATTTTTGTGTGCCAGAGTATGGTACACAGCACGGTCGTCTACATTTCCACGCAGTGCA 984 ||||||||||||||| |||||||||||| | || ||||| |||||||| || ||||| Sbjct 121 GTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCTTCATTTCCATGCGGTGCA 180 Query 985 TCTTATGCGCACACTTCCTCTGGGTTCTCTGCACCCTAACTTCGGTAAGCTGGTACGCAT 1044 ||||||| ||||||||| ||| | ||||||| || ||| | |||||||| Sbjct 181 CTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAA 240 Query 1045 CAATCGGCAAATAAATAGCTTGCAAAACACGTGGCCTTATGGTTACTCTATGCCCATCGC 1104 || || |||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 241 TCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGC 300 Query 1105 AGTCCGGTACTCCCAAGACGCATTCTCTCGCGCTGGCTGGCTCTGGCCTGTGGACTCAAA 1164 ||| || ||| | || ||||| || || || |||| ||| | |||||||| || | || Sbjct 301 AGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGATGCTAA 360 Query 1165 GGGTGAACCCCTTAAAGCTACCTCGTATATGGCTGTAGGCTTCTACGTTGCTAAATACGT 1224 ||||| || |||||||||||| ||||||||||| || ||||| || ||||||||||| Sbjct 361 AGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATGTGGCTAAATACGT 420 Query 1225 TAACAAAAAATCAGATATTGACATGGCCGTAAAAGGCCTAGGGAATAAAGAATGGAACAA 1284 ||||||||| |||||||| ||| | || | ||||| ||||| ||||||||||||||| Sbjct 421 TAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTAAAGAATGGAACAA 480 Query 1285 TTCACTCAAAACCAAAATCAACCTCATACCCAAGAAAGTGTTCAGAATACGAATGTCTCG 1344 ||||| |||||||| | || | |||||||| |||||||||| ||||| || Sbjct 481 CTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAATCAGAATGAGCCG 540 Query 1345 CAATTTCGGAATGAAACTGTTATCAATGGCTCACCTGTCAGCGGAAACCCTGATGGAACT 1404 ||| ||||| |||||| || | ||||| | | ||||| |||| | | || |||| Sbjct 541 CAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGTGCTTAATCCAACT 600 Query 1405 GACCCAAGTGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGCAGAACGCCAAGAA 1464 ||| | |||||||||||| ||| ||||||||| | || |||||||||||||| || | Sbjct 601 TACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGCAGAACGCAAAAAG 660 Query 1465 AGAGCTCAAATCGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGGAGGCGCAACCTGT 1524 |||| | | || |||||||| ||| |||| ||||||||||||| |||||||||||| Sbjct 661 AGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGGCGGCGCAACCTGT 720 Query 1525 GACGACGAATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAACCT 1584 |||||| |||||||| ||||| |||||| || || || || || | |||||||| Sbjct 721 GACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCT 780 Query 1585 ACAGAGTTTTATCGCTTCAATGACCACGAAATTAACAAGTACGGATATTTCTGATGAAAC 1644 ||||||||||||||||| ||||| ||| |||||| | |||||||||||||||| | Sbjct 781 GCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTC 840 Query 1645 CAAAAACTACGTTGCTTCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGTG 1704 ||||| || ||| | ||||||||| || |||| |||||||||||||||||||| Sbjct 841 GAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAATTAAATCGAAGTG 900 Query 1705 GACTGCTGGTGGAAAATGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTCTTAC 1764 ||||||||| |||||||||| |||||| | || ||| | |||||| |||||| Sbjct 901 GACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTAC 960 Query 1765 TTTGCAACCTTTCGCCATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACGAGGA 1823 ||||| |||||||||||||| || |||| | ||| ||||||||||||| | || ||||| Sbjct 961 TTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGA 1019 Query 1824 GAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATTT 1883 ||| | | |||||| | || | || ||||||||||||| | || || |||||| Sbjct 1020 GAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTT 1079 Query 1884 CGTGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCCACATC 1943 || ||||||| | | || | ||||||| | ||||| ||||| || |||| || Sbjct 1080 TGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGATTACTATCTGAGTC 1139 Query 1944 GTCAACTGACACAAACCAC--AAAGGAAACTGAAATGTCTAAATCAA---AC-GAATCTG 1997 ||| |||||| | ||| || ||||| | | |||| || ||| Sbjct 1140 CGATGCTG--TTCAACCACTAATAGGTAA--GAAAT-CATGAGTCAAGTTACTGAACAAT 1194 Query 1998 CTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTG 2057 | ||| || || || ||| | || ||||| || || ||||| || ||| | ||| | | Sbjct 1195 CCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGG 1254 Query 2058 ACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACC 2117 | || || || || ||||| || || | || | || || ||||||||||| |||| Sbjct 1255 ATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACC 1314 Query 2118 GTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGG 2176 | || || ||||| || ||| | ||||||||||| ||||| || ||||||||||| || Sbjct 1315 GCTCTCGTGCTCGTCGCTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGA 1373 Query 2177 TATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCAT 2236 || |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 1374 TACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCAT 1433 Query 2237 CCCGTTAACATCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATC 2296 ||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| |||||||| Sbjct 1434 CCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATT 1493 Query 2297 GTCAATGGTGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGTT 2356 | ||||| || || || || ||||||||| ||||| ||||||| || || | | ||| Sbjct 1494 ATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTA 1553 Query 2357 CGCGCCGGAAACAAAGATCTTATCGGTCACGCTGAAACAAACATCCGTGAACAGTTACGC 2416 ||||| ||||||| || || | | |||| ||| |||| | ||| || | ||||| Sbjct 1554 CGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGT 1613 Query 2417 GCTCAAGGTGTCATGTAAAGACCTTTGATTTTATCGTCTTCACTTTTAAGGAGTT----A 2472 || |||| || |||||| | | | | || | || || | | Sbjct 1614 GCAGAAGGAGTGATGTAATG--------TCTAAAGGTAAAAAACGTTCTGGCGCTCGCCC 1665 Query 2473 TGTAATGAAAAAATCAATTCGCCGCTCTGGTGGCAAATCTAAGGGTGCCCGTCTCTGGTA 2532 || | | | || | || ||||| ||| || || ||||| ||||| Sbjct 1666 TGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGGTA 1725 Query 2533 TGTAGGCGGAACACAATACTAATCTTTTATGTGGGACCGCGGTCCCACTCTATTTAAGGA 2592 |||||| || ||||| ||| || | ||| | ||| ||| || || |||| Sbjct 1726 TGTAGGTGGTCAACAATTTTAA--TTGCA---GGGGCTTCGGCCCC---TTACTTGAGGA 1777 Query 2593 TACAAAAATGTCTAACGTTCAAACATCTGCGGACCGTGTACCTCATGACTTATCTCACCT 2652 || || |||||||| ||||||| || || ||| | || |||||| | || || || Sbjct 1778 TA-AATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCCATCT 1836 Query 2653 TGTCTTTGAGGCTGGTAAAATTGGCCGCCTCAAAACTATCTCTTGGACGCCTGGTGGTGC 2712 || ||| |||||| | ||||| || || | || || || || || | | || Sbjct 1837 TGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGGTTATCGC 1896 Query 2713 TGGTGACTCTTTCGAGTGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTTCGTCGTGG 2772 ||| ||||| |||||| || ||||||||| | ||||| || || | |||||||| Sbjct 1897 TGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCGTCGTGG 1956 Query 2773 CCTCGCTGTTGACTCACGCGTTGATATCTTTCCTTTCTATATCCCACACCGTCATATCTA 2832 ||| ||| ||||||| || || || ||| |||| ||| |||| || ||||| | || Sbjct 1957 CCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCACGTTTA 2016 Query 2833 CGGTCAGCAGTGGATTAACTTTATGAAGGATGGCGTTAATGCCTCCCCTCTTCCTCCTGT 2892 ||| | ||||||||||| || ||||||||||| ||||||||| | ||||| || |||| Sbjct 2017 TGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTCCCGACTGT 2076 Query 2893 TACATGCTCCTCTGGTT---GGGACTCTGCTGCTTATCTCGGTACCATTCCGTCTTCTAC 2949 || | | |||||| ||| ||| |||| ||| || || ||| || ||| Sbjct 2077 TA---ACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCTGATAC 2133 Query 2950 CCTTAAAGTGCCTAAATTCTTACATCAGGGCTATCTGAATATTTATAATAACTACTTCAA 3009 | |||| | ||||| || |||||| ||| ||||||| ||||| ||||| || || Sbjct 2134 CAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAA 2193 Query 3010 ACCGCCTTGGTCTGATGACTTAACTTAC----GCTAACCCATCCAATATGCCT--TC-TG 3062 | |||| || |||| || | | ||| ||||||| | ||| || | || | Sbjct 2194 AGCGCCGTG----GATGCCTGACCGTACCGAGGCTAACC---CTAATGAGCTTAATCAAG 2246 Query 3063 AGGATTATAAATGGGGCGTACGTGTCGCTAACCTTAAATCTATCTGGACTGCGCCACTTC 3122 | ||| | | || | ||| | | || ||| || |||||||| || |||| Sbjct 2247 ATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTTC 2306 Query 3123 CACCGGATACTCGTACATCTGAAAACATGACTACTGGTACATCCACTATTGACATTATGG 3182 | || || ||| ||| | ||||| ||| ||| | ||||||||||||||| Sbjct 2307 CTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTATGG 2366 Query 3183 GCCTTCAAGCCGCATACGCTAAATTACATACGGAACAGGAACGTGATTACTTCATGACCC 3242 | || ||||| || || ||||| || ||||| || || |||||||||||||||||| | Sbjct 2367 GTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGC 2426 Query 3243 GTTACCGTGACATTATGAAAGAGTTCGGCGGTCATACATCCTATGATGGTGACAATCGTC 3302 |||||| ||| |||| || || ||| | || || ||||| | |||||| |||| Sbjct 2427 GTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTC 2486 Query 3303 CTCTTCTGCTCATGCGCTCTGAATTTTGGGCATCTGGCTATGACGTAGACGGTACTGACC 3362 || | || ||||||||||| | | ||||||||||||||||| || || || ||||||| Sbjct 2487 CTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGACC 2546 Query 3363 AATCTTCTCTCGGTCAATTCTCTGGTCGCGTTCAGCAGACCTTCAATCACAAAGTCCCAC 3422 || | || | || || || |||||||| ||||| ||||||| || || || || | Sbjct 2547 AAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGC 2606 Query 3423 GCTTCTATGTTCCTGAGCATCGCGTAATTATGACTCTGGCGGTTACTCGCTTTCCGCCTA 3482 | |||| ||||||||||||| || || | ||||| ||| || ||| |||||||||| Sbjct 2607 GTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCCTA 2666 Query 3483 CT--CATGAAATGGAAATGCACTATCTTGTAGGTAAAGAAAACTTAACTTATACCGATAT 3540 || | ||| || || || || ||| | ||||| || |||||||||||||| Sbjct 2667 CTGCGACTAAA--GAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATAT 2724 Query 3541 TGCTTGTGACCCTGCACTG-ATGGCTAACCTGCCACCTCGTGAAGTATCCTTAAAAGAAT 3599 |||| | ||||||| || ||||| ||| |||| || |||||| | || | || || Sbjct 2725 TGCTGGCGACCCTGTTTTGTATGGC-AACTTGCCGCCGCGTGAAATTTCTATGAAGGATG 2783 Query 3600 TCTTCC--ACTCCTCACCCGATTCTGCTAAATTCAAAATCGCTGAGGGCCAATGGTATCG 3657 | |||| || | | || ||| || || || || |||||||| || |||||||| Sbjct 2784 TTTTCCGTTCTGGTGATTCG--TCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCG 2841 Query 3658 T 3658 | Sbjct 2842 T 2842 Score = 163 bits (180), Expect = 1e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 5095 ACATCACGCGAAAATACTAAGGATACTGTCTATGCTCAAAATGAAATGCTCGCGTATAAC 5154 || |||||| | ||||| || || || ||||| |||||||| ||||| || ||| | Sbjct 4260 ACTTCACGCCAGAATACGAAAGACCAGGTATATGCACAAAATGAGATGCTTGCTTATCAA 4319 Query 5155 CAAAAAGAGTCTATGTCACGCGTTGGCGCTATTCTCGAAAACACAAGCCTCACCAAACAG 5214 || || ||||||| | ||||||| ||||| | |||||||| | || |||| || Sbjct 4320 CAGAAGGAGTCTACTGCTCGCGTTGCGTCTATTATGGAAAACACCAATCTTTCCAAGCAA 4379 Query 5215 CAACAAACTTCTGAAATTATGCGGCAAATGCTTACTCAGGCTCAAACCGCAGGTCAATAT 5274 || || ||| || |||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 4380 CAGCAGGTTTCCGAGATTATGCGCCAAATGCTTACTCAAGCTCAAACGGCTGGTCAGTAT 4439 Query 5275 TTTACAAATGACCAAATCAAGGAGCTTACGAGAAAAGTTGGTGCTGATATTGA 5327 ||||| |||||||||||||| || | || | || ||| ||||||| |||| Sbjct 4440 TTTACCAATGACCAAATCAAAGAAATGACTCGCAAGGTTAGTGCTGAGGTTGA 4492 Score = 150 bits (166), Expect = 6e-33 Identities = 324/482 (67%), Gaps = 17/482 (4%) Strand=Plus/Plus Query 4563 TATGTTTGGCTCTATCGCTGGCGGTATCGCCTCCGCACTTGCCGGAGGCCTTATGGGTAA 4622 ||||||||| |||| ||||||||||| || || || ||||| || ||| ||| ||| Sbjct 3713 TATGTTTGGTGCTATTGCTGGCGGTATTGCTTCTGCTCTTGCTGGTGGCGCCATGTCTAA 3772 Query 4623 ATTATTTGGCGGCGGTCAGTCCGCCGACTCTACCGGAATCCAAGGCAACGTCCTTGCTTC 4682 ||| ||||| |||||||| |||| ||| || || ||||| | || |||||| | Sbjct 3773 ATTGTTTGGAGGCGGTCAAAAAGCCGCCTCCGGTGGCATTCAAGGTGATGTGCTTGCTAC 3832 Query 4683 CGACAACAATGTTGTAGGTGCTAATGATGCTGGTATTAAATCTGCTATTCAGGGCTCTAC 4742 ||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3833 CGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCATTCAAGGCTCTAA 3892 Query 4743 TGTCCCTAACTCTCAGGAAGCTGCTCCCT-CTGCTATCTCTGGCATCCTTGCCGACTCTG 4801 ||| |||||| || | || || | ||||| | | | ||||| | || | ||| Sbjct 3893 TGTTCCTAACCCTGATGAGGCCG-TCCCTAGTTTTGTTTCTGGTGCTATGGCTAAAGCTG 3951 Query 4802 G-CAAGCA-----------TGCGCTCTCGTCTCTTACCAATGCTGGTGCAAATAAACTCA 4849 | ||| | | || | | || || ||| | | | |||| | Sbjct 3952 GTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCGTTTCTGATAAGTTGC 4011 Query 4850 TGGAGGCTGTCGGCCTTTCT---AAGTCTGCCTCTGACAAGGGCAAGGACACAAAAGACT 4906 | || || || ||| | ||||||||| |||| || || ||||| || || | Sbjct 4012 TTGATTTGGTTGGACTTGGTGGCAAGTCTGCCGCTGATAAAGGAAAGGATACTCGTGATT 4071 Query 4907 ATCTCGCCGCCGCATTCCCCGAGCTCAACCCATGGGAACGTGCTGGTGCTGGCGCTTCTA 4966 |||| || || ||||| || ||||| || | ||||| ||||||||||||| ||||| Sbjct 4072 ATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCGTGCTGGTGCTGATGCTTCCT 4131 Query 4967 GTCCAGGCATGCAAGACGCTGGCTTCCAAAATCAGAAGGAGCTAACCAAGATGCAGCTTG 5026 | | || ||| | ||| || || | ||||| || ||||| || || ||||| || | Sbjct 4132 CTGCTGGTATGGTTGTCGCCGGATTTGAGAATCAAAAAGAGCTTACTAAAATGCAACTGG 4191 Query 5027 AC 5028 || Sbjct 4192 AC 4193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17200844393360