Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq2746659 949 0.0 >seq2746659 Length=5386 Score = 949 bits (1052), Expect = 0.0 Identities = 1330/1857 (72%), Gaps = 73/1857 (4%) Strand=Plus/Plus Query 2557 TTCAGGCTAGCGCTGTTCTGGATATCACTGAGGAAGATTTCGACTTCCTGACTGGTGATA 2616 |||||||| || ||| ||||| | || || || |||||||| || ||||| || | | Sbjct 1234 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 1293 Query 2617 AGATTTGGATTGCCACCGACCGCAACCGTGCGCGTCGCTGTGTGGAGGCTTGTGTTTATG 2676 | |||||||||| || |||||| ||||| |||||||| || |||||||| ||||||| Sbjct 1294 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 1353 Query 2677 GAGCGCTGGACTTTGTCGGCTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2736 | ||||||||||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 1354 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 1413 Query 2737 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACAGCATGCCTCGTTATGGAAGGCG 2796 |||||||||||||||||||||||||||||||||| || || || ||| | |||||||||| Sbjct 1414 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 1473 Query 2797 CGGAGTTTAGCGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAACGCCGCTGAGCTCT 2856 | || |||| ||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 1474 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 1533 Query 2857 TCGCGTACACCCTGCGTATTAAGGCAGGATTCAAAGAAACTGTAATTGATGCCGAGGAAA 2916 |||||| ||| ||||| | |||||| || || | | | ||| || || |||| Sbjct 1534 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAA 1593 Query 2917 ATGCTCGTCAGAAATTACGCGCAAATGGACTGA---AATGATATGAAG--AAAGCACGT- 2970 | | ||||| |||||||| ||| | ||| ||| |||| | | ||| ||| |||| Sbjct 1594 ACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATG-TCTAAAGGTAAAAAACGTT 1652 Query 2971 ----CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTG 2995 || || || | |||||| ||||||| | Sbjct 1653 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 1712 Query 2996 CCCGCCTTTGGTATGTAGGCGGTTCTCAGTTTTAATTATGAGCCCTTCGGGGCTCT--TT 3053 | || |||||||||||||| ||| || |||||||| | |||||| | | || Sbjct 1713 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTT 1772 Query 3054 AAGGA-AAATTAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTTTC 3112 |||| |||||| |||||||| | |||||| ||| || ||| ||||||||| Sbjct 1773 GAGGATAAATTA--TGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTC 1830 Query 3113 TCATCTTGCCTT--TGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCATGGACTCCT 3170 ||||||| ||| | ||| | || |||||||||| | | || ||||| ||||| Sbjct 1831 CCATCTTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCG 1888 Query 3171 GTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTCTCCTCTG 3230 ||||| |||||||| ||||| ||| | || || ||||||||| | ||||||||||| || Sbjct 1889 GTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTG 1948 Query 3231 CGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATATTCCGCATCGC 3290 |||||||| | ||||||||||||| || || |||| ||||| ||| | || ||||| Sbjct 1949 CGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGT 2008 Query 3291 CATGTTTATGGTGACCAGTGGATTCAATTTATGCGTGATGGTGTTGATGCCGCACCACTC 3350 || ||||||||||| ||||||||| | || ||| ||||||||| ||||| | || ||| Sbjct 2009 CACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGATGGTGTTAATGCCACTCCTCTC 2068 Query 3351 CCTTCCGTTACTACTACTCAGTATCCGGATGACGCTGGTTATGTTGGTACTATTGTTCCT 3410 || | |||| |||||| ||| || | || | || | |||| || ||| ||| Sbjct 2069 CCGACTGTTAACACTACTGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCT 2128 Query 3411 AAGAGCAACCGTATTCCTAAGTTTTTGCATCAGTCTTATCTGAATATTTATAATAACTAT 3470 | | ||| || |||||| |||| |||| |||| ||||||| ||||| |||||| Sbjct 2129 GATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAACTAT 2188 Query 3471 TTCCGTGCGCCGTGGATGCCTGAGCGTACTGAAGCTAATCCTTCAAAT----TTAGACCG 3526 || ||||||||||||||||| ||||| || ||||| ||| ||| ||| | | Sbjct 2189 TTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCT---AATGAGCTTA-ATCA 2244 Query 3527 TGATGATTCTCGCTATGGATTCCGTTGCTGCCATCTTAAAACTATTTGGTCTGCTCCTCT 3586 |||||| |||| ||||| ||||||||||||||||| |||| |||||| ||||||| || Sbjct 2245 AGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCT 2304 Query 3587 TCCTCCGGAAACTAAGCTCGCTGAGCAAATGGGCATTGAAAGCAATTCCATTGATATTAT 3646 |||||| || ||| |||| || |||||| | | | || || ||||| ||||| Sbjct 2305 TCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACATCTATTGACATTAT 2364 Query 3647 GGGTTTGCAGGCCGCTTATGCGCAGCTTCATACTGAGCAGGAGCGTACTTATTTCATGCA 3706 |||| |||| || |||||||| | | |||||||| || || ||| ||| |||||||| Sbjct 2365 GGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCA 2424 Query 3707 GCGTTATCGTGATGTTATCTCCAGCTTTGGCGGTTCAACCTCCTATGATGCCGATAACCG 3766 |||||| | ||||||||| || ||||| ||| |||||| ||||| || || ||||| Sbjct 2425 GCGTTACCATGATGTTATTTCTTCATTTGGAGGTAAAACCTCTTATGACGCTGACAACCG 2484 Query 3767 ACCGTTGCTTGTTATGCACACCGATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGA 3826 || || ||||| |||| | | || ||||||| || || || || ||||| || || || Sbjct 2485 TCCTTTACTTGTCATGCGCTCTAATCTCTGGGCATCTGGCTATGATGTTGATGGAACTGA 2544 Query 3827 CCAATCTTCCCTCGGACAGTTTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCC 3886 |||| | || | || |||||||| ||||| || |||||||| | |||||| || ||||| Sbjct 2545 CCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGCC 2604 Query 3887 TCGATTCTTCGTGCCGGAGCATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCCGCC 3946 || ||||| || || |||||||| ||| | ||| | ||| ||||| || ||||| Sbjct 2605 GCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTGCGCTTGTTCGTTTTCCGCC 2664 Query 3947 TATCAGTCCTTTGGAGCATCATTATCTTGTTGGTCGTAATAATTTGACTTATACCGACCT 4006 || || ||| ||| || ||| | | | ||||||||||||||| | Sbjct 2665 TACTGCGACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGATAT 2724 Query 4007 TGCGGGTGACCCGGCTTTGATTGGTAATTTGCCGCCACGTGAGATTTCTTATCAGGATCT 4066 ||| || ||||| | |||| ||| || |||||||| ||||| |||||| ||||| | Sbjct 2725 TGCTGGCGACCCTGTTTTGTATGGCAACTTGCCGCCGCGTGAAATTTCTATGAAGGATGT 2784 Query 4067 TTTCCGTGATGGTCGTCCGGGCATTAAGATTAAGGTTGCCGAGTCTATCTGGTATCGTAC 4126 ||||||| |||| | || | ||| ||||| |||| ||| | ||||||||| Sbjct 2785 TTTCCGTTCTGGTGATTCGTCTAAGAAGTTTAAGATTGCTGAGGGTCAGTGGTATCGTTA 2844 Query 4127 TCATCCGGATTATGTTAACTAC-AAGTATCAGTTACTTGAAGGTTTTCCGTTCCTTGATG 4185 | || |||||| || | ||||| | |||||||| || || ||| || | | Sbjct 2845 TGCGCCTTCGTATGTT-TCTCCTGCTTATCACCTTCTTGAAGGCTTCCCATTCATTCAGG 2903 Query 4186 ATGCGCCCGGTACGACTAGTGGTGATGACCTTCAGAAGGCTATTCTCATTGACCATAATG 4245 | ||| || ||||||| | |||| || | || ||| ||| ||| Sbjct 2904 AACCGC---------CTTCTGGTGATTTGC--AAGAACGC-GTACTTATTCGCCACCATG 2951 Query 4246 ACTATAATGCCTGTTTCCAGTCTCAGCAGTTGCTTCAGTGGAATAATCAGGCTCGTTATA 4305 | ||| | ||||||||||| |||||| | |||||||||| ||||| | | || Sbjct 2952 ATTATGACCAGTGTTTCCAGTCCGTTCAGTTGTTGCAGTGGAATAGTCAGGTTAAATTTA 3011 Query 4306 ATGTCAATGTTTATCGTCATATTCCTACTGTTCGTGATTCTATTATGACCTCTTGAT 4362 |||| | |||||||| || | || || ||| ||||| || ||||| || |||| Sbjct 3012 ATGTGACCGTTTATCGCAATCTGCCGACCACTCGCGATTCAATCATGACTTCGTGAT 3068 Score = 178 bits (196), Expect = 5e-41 Identities = 225/304 (74%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 5469 AGGAAAGGCAACCCGTGATTACTTGGCAGCGGCTTTCCCTGAGCTCAACCCATGGGAACG 5528 |||||||| || |||||||| | || || || || |||||||| || | ||||| || Sbjct 4052 AGGAAAGGATACTCGTGATTATCTTGCTGCTGCATTTCCTGAGCTTAATGCTTGGGAGCG 4111 Query 5529 TGCTGGAGCTGATGCTTCCACTGCCGGGTTAGA-GTCTTCCGCTC--AGAATCAACAAAA 5585 |||||| |||||||||||| |||| || | | ||| | | | |||||||| || Sbjct 4112 TGCTGGTGCTGATGCTTCCTCTGCTGGTATGGTTGTCGCCGGATTTGAGAATCAA---AA 4168 Query 5586 AGAGATGCTTAAAATGCAACTGGATAACCAGAAGGATATTGCCAAGATGCAGA-TGAATA 5644 |||| | ||||||||||||||| || ||||| || |||||| ||||||| | ||| Sbjct 4169 AGAGCTTACTAAAATGCAACTGGACAATCAGAAAGAGATTGCCGAGATGCAAAATGAGAC 4228 Query 5645 ACAATTTGCAGATTGCTGGCATTCAGTCCGCTACATCTCGCCAGAATACGAAGGATTCTG 5704 ||| | ||||||||||||||||||| || || || |||||||||||||| || | Sbjct 4229 TCAAAAAG-AGATTGCTGGCATTCAGTCGGCGACTTCACGCCAGAATACGAAAGACCAGG 4287 Query 5705 TTTATGCCCAGAATGAGATGCTTCAGTATAATCAACGTGAGTCGCAGGCACGCGTTGCGT 5764 | ||||| || |||||||||||| ||| | || ||||| || |||||||||| Sbjct 4288 TATATGCACAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGCGT 4347 Query 5765 CCAT 5768 | || Sbjct 4348 CTAT 4351 Score = 158 bits (174), Expect = 5e-35 Identities = 252/357 (71%), Gaps = 6/357 (2%) Strand=Plus/Plus Query 1333 CCGTTTGCAGGCTTTTAATGAAAACCCCAATGCTCTTCGTGATTATTTTAGGACTGTTGG 1392 ||| || |||| ||| |||| || ||||||||| | ||||| |||||| | | |||| Sbjct 1 CCGATTAGAGGCGTTTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGG 60 Query 1393 TCGAGCTGTTCTGCGCGCTGAAGGTCGTTCGGTTAAGGATTCCTACAACGACTGCTATCG 1452 ||| ||||| || || ||||| || ||| ||||| || ||||||||||| Sbjct 61 TCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCA 120 Query 1453 TTATCTTTGTGTGCCGGAGTTTGGAGGTCAGC--ACGGCCGTCTTCATTGGCACGTTGTG 1510 ||| |||||||||| |||| || | |||| | ||||||||||||| || | ||| Sbjct 121 GTATTTTTGTGTGCCTGAGTATG--GTACAGCTAATGGCCGTCTTCATTTCCATGCGGTG 178 Query 1511 CATATGGTGCGGACTCTTCCTTTGGGAAGTCACGACCCTAATTTCGGTCGCAAGGTACGT 1570 || | ||||||| |||||| || || ||||||||||| ||||| |||||| Sbjct 179 CACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGC 238 Query 1571 AATTATCGCCAGATTAACTCG-TTCCGTGGCATGTGGCCCTATGGCTTCACGCAACCGAT 1629 ||| |||||| |||| | | || | | |||||| ||||| | || || || Sbjct 239 AATCGCCGCCAG-TTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCAT 297 Query 1630 AGCTGTTCGCTATCAACATGACGCTTATTCTCGTAAAGGTTGGCTGTGGCCTGTTGA 1686 || |||||||| || ||||||| ||| ||| |||||| ||||||||||||| Sbjct 298 CGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 18805470259720