Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cephus_20cinctus_20[refseq_20GCF_5F000341935.1_202014-07-09] 1,976 sequences; 162,245,578 total letters Query= NC_001270.2 Length=6825 Score E Sequences producing significant alignments: (Bits) Value seq1668 197 6e-47 seq1122 152 2e-33 seq1322 132 2e-27 seq1472 123 1e-24 seq693 123 1e-24 >seq1668 Length=13965 Score = 197 bits (218), Expect = 6e-47 Identities = 293/411 (71%), Gaps = 11/411 (3%) Strand=Plus/Minus Query 2567 TGGTAATTATGTTAAAAATATTGTTTTACCACTAGAAT----TAGTtaataataatcctc 2622 |||| ||||||||||||||| ||||||| | || | || | |||||||| | Sbjct 3549 TGGTGCTTATGTTAAAAATATAATTTTACCTAT-GAGTGCTATATTAAATAATAAAC--- 3494 Query 2623 gtaataaaatgggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTA 2682 ||||| || | || |||||||| || | ||||||||||| || | |||||| || Sbjct 3493 GTAATGAAGTTGGTATTAAAAATTTAGGTATTAATGATAAAAAGTTACGTAATAGTACTA 3434 Query 2683 TTCGCTCGCAAGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATT 2742 |||| | || || | || | ||||||| | | ||||||| |||| ||| || Sbjct 3433 TTCGTACTAAAACAAGATTAATACATAAAGCATTTCATAATTTTTATAATTCAAAAGTTT 3374 Query 2743 TAAGTTTTTTGACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATG 2802 |||||||| | |||||||||||||| | ||| | ||||| |||| ||| ||| ||| Sbjct 3373 TAAGTTTTGTTACTTTAACTTATGCTGATAACATGCAAGATATTAATAAAGCAAAACATG 3314 Query 2803 ATTTAAAGTTATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAA 2862 || | |||| ||||| | |||| ||||||||||| | |||| ||||||||| Sbjct 3313 ATATTGCTATATTCTTTAAACGTTTAAAGCGTTGATGAAATGACCCTAAACGTTCTAAAT 3254 Query 2863 ATCATAAAGGAATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTC 2922 || || ||| ||||||||||||||| ||| || ||||||||||| || || ||| Sbjct 3253 AT-TTAGGTGAA--TTAAAATATATGTATGTTTACGAATATCAAAAACGTGGTGCTATTC 3197 Query 2923 ACTTTCATATCATATTAAACCAAAAAATACCTAACAGTGTTGTACAACAAT 2973 | |||||||| |||| || |||||||| ||| ||| | ||| |||| Sbjct 3196 ATTTTCATATATTATTTAATAGAAAAATACATAAAAGTATGTTACCCCAAT 3146 >seq1122 Length=20527 Score = 152 bits (168), Expect = 2e-33 Identities = 266/382 (70%), Gaps = 9/382 (2%) Strand=Plus/Plus Query 2573 TTATGTTAAAAATATTGTTTTACCACTAGAATTAGTtaataataatcctcgtaataaaat 2632 ||||||||||||| |||||||||| | || || ||| || ||| | | |||||| | Sbjct 12053 TTATGTTAAAAATGTTGTTTTACCTATTGA--TA-TTATTAGAAATGATAGAAATAAATT 12109 Query 2633 gggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTCGCTCGCA 2692 || | ||||| | ||| || ||| ||| || | |||| | | |||| | | Sbjct 12110 AGGTATAAAAAACATTGGTAATAATACTAAG---TTAAGAAATAATAATGTTCGTACTAA 12166 Query 2693 AGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTT 2752 | || | |||| ||||||| | ||||||| ||| | | |||||||||||| Sbjct 12167 ATCTAAATTAATTCAAAAAGCATTACATAATTTTTATAATGCAAGAGTTTTAAGTTTTTT 12226 Query 2753 GACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTT 2812 |||||||||||| ||||| | ||| ||| |||| ||||| ||| | || Sbjct 12227 AACTTTAACTTATCATAAAAATGAAACTGATATTAGAAAAGCAAAAAAAGATATCCGTTT 12286 Query 2813 ATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGG 2872 |||||||| | |||| ||||||||||| | |||| ||||||||| || || | Sbjct 12287 ATTTTTTATTTTGTTAAAACGTTGATGAAATGACCCTAAACGTTCTAAATAT-TTAGGTG 12345 Query 2873 AATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATAT 2932 || |||||| || | ||| |||||| |||||| |||| || |||||||| |||||||| Sbjct 12346 AA--TTAAAACATTTTTATGTTTATGAATATCAAGAACGTGGTGCAGTTCATTTTCATAT 12403 Query 2933 CATATTAAACCAAAAAATACCT 2954 |||| || | ||||||||| Sbjct 12404 ACTATTTAATCGTAAAATACCT 12425 Score = 136 bits (150), Expect = 2e-28 Identities = 236/340 (69%), Gaps = 11/340 (3%) Strand=Plus/Plus Query 2697 AATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTTGACT 2756 |||| |||| ||||||| | ||||||| | | |||||| ||||||||| | ||| Sbjct 13425 AATTTAATTCAAAAAGCATTACATAATTTTTATAGTAGTAAAATGTTAAGTTTTGTTACT 13484 Query 2757 TTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTTATTT 2816 ||||||||| | |||| | ||||| |||||||| ||||| ||| | |||||| Sbjct 13485 TTAACTTATAAAGATAATATGCAAGATATTAAAAAAGCAAAAAAAGATATTGGTTTATTT 13544 Query 2817 TTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGGAATT 2876 |||| ||| |||| |||||||| | |||| |||| | ||| || |||| Sbjct 13545 TTTATTAAATTAAAGAAATGATGAAATGACCCTAAACGTTTTCAAA---ATTTAGGAGAA 13601 Query 2877 TTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATATCATA 2936 ||||||||| | ||| |||||| ||||| ||| || || |||| |||||||| || Sbjct 13602 TTAAAATATTTTTATGTTTATGAATATCAGTCACGTGGCGCTATTCATTTTCATATAATT 13661 Query 2937 TTAAACCAAAAAATACCTAACAGTGTTGTACAACAATACTGAAAACACGGTATTAATAAA 2996 || || ||| |||| ||| ||| | || | ||| |||| || ||| ||||| Sbjct 13662 TTTAATAGAAAGATACATAAAAGTATGTTAGCAGAATGATGAACTCATGGTTTTAAT--- 13718 Query 2997 AATATTAAAGTTCGTGC----AGGTTCTAATGAAGATGTT 3032 || | |||||| |||| |||| | |||||| |||| Sbjct 13719 GATTTAAAAGTT-GTGCATAAAGGTACGAATGAATTTGTT 13757 >seq1322 Length=110664 Score = 132 bits (146), Expect = 2e-27 Identities = 229/332 (69%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 2662 aaaaatTGTGGAATAGTCGTATTCGCTCGCAAGGAAATTGTATTCGGAAAGCATATGAAA 2721 |||||||| | |||||| | |||| | || |||| |||| ||||||| | | Sbjct 35876 AAAAATTGAGAAATAGTACTGTTCGTACTAAAACTAATTTAATTCAAAAAGCATTACATA 35817 Query 2722 ATTTTTGAAATTGTAAAAATTTAAGTTTTTTGACTTTAACTTATGCCGTTAATGAGAAAG 2781 |||||| ||| |||| | ||||||||| | |||||||||||| | |||| | ||| Sbjct 35816 ATTTTTATAATAGTAATATGTTAAGTTTTGTTACTTTAACTTATAAAGATAATATGCAAG 35757 Query 2782 ATGTTAAAAAATGTAAAAATGATTTAAAGTTATTTTTTAATAATATAAATCGTTGATGAA 2841 ||||||||||| ||||| ||| | |||||||||| ||| || | ||||||| Sbjct 35756 ATGTTAAAAAAGCAAAAAAAGATATTGGTTTATTTTTTATTAAATTACAAAAGTGATGAA 35697 Query 2842 ACAATCCTATTCGTTCTAAAAATCATAAAGGAATTTTAAAATATATGTATACTTATGAGT 2901 | | |||| |||| | ||| |||| ||||||||| | ||| |||||||| Sbjct 35696 ATGACCCTAAACGTTTT---TCCCATTTAGGAGAATTAAAATATTTTTATGTTTATGAGT 35640 Query 2902 ATCAAAAACGCGGAGCAGTTCACTTTCATATCATATTAAACCAAAAAATACCTAACAGTG 2961 ||||| || || || | || |||||||| || || || ||| |||| ||| ||| Sbjct 35639 ATCAATCTCGTGGTGCTATACATTTTCATATAATTTTTAATAGAAAGATACATAAAAGTA 35580 Query 2962 TTGTACAACAATACTGAAAACACGGTATTAAT 2993 | || | ||| |||| || ||| ||||| Sbjct 35579 TGTTAGCAGAATGATGAATTCATGGTTTTAAT 35548 >seq1472 Length=59721 Score = 123 bits (136), Expect = 1e-24 Identities = 180/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 2709 AAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTTGACTTTAACTTATGCC 2768 ||||||| | |||||||| || || ||| ||||||||| | |||||||||||| Sbjct 2460 AAAGCATTACATAATTTTTGTGATAGTCAAATGTTAAGTTTTCTTACTTTAACTTATAAA 2401 Query 2769 GTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTTATTTTTTAATAATATA 2828 | |||| | ||||| ||| |||| ||||| ||| | ||||||||| ||| || Sbjct 2400 GATAATATGCAAGATATTAGAAAAGCAAAAAAAGATATTCGTTTATTTTTTCTTAAATTA 2341 Query 2829 AATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGGAATTTTAAAATATATG 2888 || |||||||| | |||| ||||||||| || || ||| || ||| || | Sbjct 2340 AAGAAATGATGAAATGACCCTAAACGTTCTAAATAT-TTAGGTGAA--TTGAAACATTTT 2284 Query 2889 TATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATATCATATTAAACCAAAAA 2948 ||| |||||| ||||||| || ||||||||||| |||||||| | || || | ||| Sbjct 2283 TATGTTTATGAATATCAAACTCGTGGAGCAGTTCATTTTCATATATTGTTTAATCGTAAA 2224 Query 2949 ATACCTAACAGT 2960 || ||| | ||| Sbjct 2223 ATTCCTTATAGT 2212 >seq693 Length=17075 Score = 123 bits (136), Expect = 1e-24 Identities = 227/332 (68%), Gaps = 3/332 (1%) Strand=Plus/Minus Query 2662 aaaaatTGTGGAATAGTCGTATTCGCTCGCAAGGAAATTGTATTCGGAAAGCATATGAAA 2721 ||||||| | |||||| | |||| | || |||| |||| ||||||| | | Sbjct 3490 AAAAATTAAGAAATAGTACTGTTCGTACTAAAACTAATTTAATTCAAAAAGCATTACATA 3431 Query 2722 ATTTTTGAAATTGTAAAAATTTAAGTTTTTTGACTTTAACTTATGCCGTTAATGAGAAAG 2781 |||||| ||| |||| | ||||||||| | |||||||||||| | |||| |||| Sbjct 3430 ATTTTTATAATAGTAAGATGTTAAGTTTTGTTACTTTAACTTATAAAGATAATATAAAAG 3371 Query 2782 ATGTTAAAAAATGTAAAAATGATTTAAAGTTATTTTTTAATAATATAAATCGTTGATGAA 2841 || |||||||| ||||| ||| | ||||||||| ||| |||| ||||||| Sbjct 3370 ATATTAAAAAAGCAAAAAAAGATATTCGTTTATTTTTTCTTAAATTAAAGAAGTGATGAA 3311 Query 2842 ACAATCCTATTCGTTCTAAAAATCATAAAGGAATTTTAAAATATATGTATACTTATGAGT 2901 || | |||| |||| | || || |||| ||||||||| | ||| |||||| | Sbjct 3310 ACGACCCTAAACGTTTT---CATTATTTAGGAGAATTAAAATATTTTTATGTTTATGAAT 3254 Query 2902 ATCAAAAACGCGGAGCAGTTCACTTTCATATCATATTAAACCAAAAAATACCTAACAGTG 2961 ||||| || || || | || |||||||| || || || ||| |||| ||| ||| Sbjct 3253 ATCAATCTCGTGGTGCTATACATTTTCATATAATTTTTAATAGAAAGATACATAAAAGTA 3194 Query 2962 TTGTACAACAATACTGAAAACACGGTATTAAT 2993 | || | ||| |||| | ||| ||||| Sbjct 3193 TGTTAGCAGAATGATGAACTTATGGTTTTAAT 3162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21724317057696