Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_001954.1 Length=8454 Score E Sequences producing significant alignments: (Bits) Value seq7409 104 1e-18 seq25260 98.7 5e-17 >seq7409 Length=4883 Score = 104 bits (114), Expect = 1e-18 Identities = 176/249 (71%), Gaps = 12/249 (5%) Strand=Plus/Plus Query 6442 GCCACGCTGTCAGATGGCACAGTCTTTGAACCTGTAAACAGTTTTCAGAAAAACCAGAAG 6501 ||||| |||||||||| | ||||| || || || || || | | | |||| | Sbjct 4331 GCCACTTTGTCAGATGGTATAGTCTATGCCCCCGTTAATAGCTACCGTAC---CCAGCAA 4387 Query 6502 AAGC---TGGCGAGACTTCAGCGACAGTTAAGCCGCAAGGTCAAATTCAGCAACAACTGG 6558 ||| | || || || || ||||||||||| ||| | || |||||||| | | ||| Sbjct 4388 CAGCGTTTAGCAAGGCTGCAACGACAGTTAAGTCGCCAAGTAAAATTCAGTGCCCATTGG 4447 Query 6559 CAGAAGCAGAAACGCAAAATACAGTGTCTGCAT--TCCCGTATCGCAAATATCCG-CAGA 6615 | || || | ||||||| || |||||| | || || || ||||| || ||| Sbjct 4448 AAAAAACAACGAAGCAAAATTCAACAGCTGCATCATACC--ATTGCCAATATTCGACAG- 4504 Query 6616 GACTACCTTCATAAAGTCACAACGACCGTCAGCAAAAACCACGCAATGATAGTCATTGAG 6675 ||||| || |||||| | ||| || |||||||||||||||| |||||||| |||||| Sbjct 4505 GACTATCTGCATAAAACCTCAAGTGCCATCAGCAAAAACCACGCGATGATAGTGATTGAG 4564 Query 6676 GATTTGAAG 6684 |||||| || Sbjct 4565 GATTTGCAG 4573 Score = 104 bits (114), Expect = 1e-18 Identities = 174/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 6598 ATCGCAAATATCCG-CAGAGACTACCTTCATAAAGTCACAACGACCGTCAGCAAAAACCA 6656 || || ||||| || ||| ||||| || |||||| | ||| || ||||||||||||| Sbjct 4640 ATTGCCAATATTCGACAG-GACTATCTGCATAAAACCTCAAGTGCCATCAGCAAAAACCA 4698 Query 6657 CGCAATGATAGTCATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTAC 6716 ||| |||||||| |||||||||||| || | | ||||||||||| || || | || || Sbjct 4699 CGCGATGATAGTGATTGAGGATTTGCAGATTAAAAACATGTCAAAATCGGCCACTGGGAC 4758 Query 6717 GGT--CAGCCAGCCGGGGCGCAATGTCCGGGCAAAATCAGGTTTAAACCGTTCGATACTG 6774 || ||| | || ||| | || || || || || || || || || || Sbjct 4759 AGTGGCAG--AACCTGGGAAAAGGGTTAAAGCTAAGTCTGGCTTGAATAAATCTATTTTG 4816 Query 6775 GATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGAGTACAAACAGCTCTGGCGTGGAGGT 6834 || ||||| ||||| || | | | ||||| ||||| || ||| | |||| ||| || Sbjct 4817 GACCAGGGTTGGTACGAGCTCAGAAGACAGCTGGAGTATAAGCAGTTGTGGCTTGGGGGC 4876 Query 6835 CAGGTGC 6841 ||||||| Sbjct 4877 CAGGTGC 4883 >seq25260 Length=1984 Score = 98.7 bits (108), Expect = 5e-17 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 6937 GTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGTAACATTTTAGCGGCGGGG 6996 || ||||| ||||||| |||||| ||| |||||| || || || |||||||| ||| Sbjct 1866 GTTTGTGGCTATACAGAGAACGCTGATTTAAATGCTGCCATGAATATATTAGCGGCAGGG 1807 Query 6997 CACGCCGTACTTGCCTGTGGAGGGACGATGCAGTCAGACCGCCCGTTGAAGCAGGAACC 7055 || | ||| | |||||||||| |||| |||||||| || | || ||||||||||||| Sbjct 1806 CATGTCGTGTTAGCCTGTGGAGAGACGGCGCAGTCAGGCCTCTCGATGAAGCAGGAACC 1748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26928606444504