Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_001954.1
Length=8454
Score E
Sequences producing significant alignments: (Bits) Value
seq7409 104 1e-18
seq25260 98.7 5e-17
>seq7409
Length=4883
Score = 104 bits (114), Expect = 1e-18
Identities = 176/249 (71%), Gaps = 12/249 (5%)
Strand=Plus/Plus
Query 6442 GCCACGCTGTCAGATGGCACAGTCTTTGAACCTGTAAACAGTTTTCAGAAAAACCAGAAG 6501
||||| |||||||||| | ||||| || || || || || | | | |||| |
Sbjct 4331 GCCACTTTGTCAGATGGTATAGTCTATGCCCCCGTTAATAGCTACCGTAC---CCAGCAA 4387
Query 6502 AAGC---TGGCGAGACTTCAGCGACAGTTAAGCCGCAAGGTCAAATTCAGCAACAACTGG 6558
||| | || || || || ||||||||||| ||| | || |||||||| | | |||
Sbjct 4388 CAGCGTTTAGCAAGGCTGCAACGACAGTTAAGTCGCCAAGTAAAATTCAGTGCCCATTGG 4447
Query 6559 CAGAAGCAGAAACGCAAAATACAGTGTCTGCAT--TCCCGTATCGCAAATATCCG-CAGA 6615
| || || | ||||||| || |||||| | || || || ||||| || |||
Sbjct 4448 AAAAAACAACGAAGCAAAATTCAACAGCTGCATCATACC--ATTGCCAATATTCGACAG- 4504
Query 6616 GACTACCTTCATAAAGTCACAACGACCGTCAGCAAAAACCACGCAATGATAGTCATTGAG 6675
||||| || |||||| | ||| || |||||||||||||||| |||||||| ||||||
Sbjct 4505 GACTATCTGCATAAAACCTCAAGTGCCATCAGCAAAAACCACGCGATGATAGTGATTGAG 4564
Query 6676 GATTTGAAG 6684
|||||| ||
Sbjct 4565 GATTTGCAG 4573
Score = 104 bits (114), Expect = 1e-18
Identities = 174/247 (70%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 6598 ATCGCAAATATCCG-CAGAGACTACCTTCATAAAGTCACAACGACCGTCAGCAAAAACCA 6656
|| || ||||| || ||| ||||| || |||||| | ||| || |||||||||||||
Sbjct 4640 ATTGCCAATATTCGACAG-GACTATCTGCATAAAACCTCAAGTGCCATCAGCAAAAACCA 4698
Query 6657 CGCAATGATAGTCATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTAC 6716
||| |||||||| |||||||||||| || | | ||||||||||| || || | || ||
Sbjct 4699 CGCGATGATAGTGATTGAGGATTTGCAGATTAAAAACATGTCAAAATCGGCCACTGGGAC 4758
Query 6717 GGT--CAGCCAGCCGGGGCGCAATGTCCGGGCAAAATCAGGTTTAAACCGTTCGATACTG 6774
|| ||| | || ||| | || || || || || || || || || ||
Sbjct 4759 AGTGGCAG--AACCTGGGAAAAGGGTTAAAGCTAAGTCTGGCTTGAATAAATCTATTTTG 4816
Query 6775 GATCAGGGCTGGTATGAAATGCGCCGCCAGCTTGAGTACAAACAGCTCTGGCGTGGAGGT 6834
|| ||||| ||||| || | | | ||||| ||||| || ||| | |||| ||| ||
Sbjct 4817 GACCAGGGTTGGTACGAGCTCAGAAGACAGCTGGAGTATAAGCAGTTGTGGCTTGGGGGC 4876
Query 6835 CAGGTGC 6841
|||||||
Sbjct 4877 CAGGTGC 4883
>seq25260
Length=1984
Score = 98.7 bits (108), Expect = 5e-17
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 6937 GTATGTGGATATACAGCGAACGCCGATGTAAATGGCGCTCGTAACATTTTAGCGGCGGGG 6996
|| ||||| ||||||| |||||| ||| |||||| || || || |||||||| |||
Sbjct 1866 GTTTGTGGCTATACAGAGAACGCTGATTTAAATGCTGCCATGAATATATTAGCGGCAGGG 1807
Query 6997 CACGCCGTACTTGCCTGTGGAGGGACGATGCAGTCAGACCGCCCGTTGAAGCAGGAACC 7055
|| | ||| | |||||||||| |||| |||||||| || | || |||||||||||||
Sbjct 1806 CATGTCGTGTTAGCCTGTGGAGAGACGGCGCAGTCAGGCCTCTCGATGAAGCAGGAACC 1748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 26928606444504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |