Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq90441 96.9 1e-16 seq69920 96.9 1e-16 >seq90441 Length=2660 Score = 96.9 bits (106), Expect = 1e-16 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 2582 TTACTGAGGAAGATTTCGATTTTCTGACTGG-TGATAAGATTTGGATTGCTACCGACCGT 2640 ||||| | || |||||||| ||||| || | | ||| | ||| ||||| | | ||| Sbjct 330 TTACTCAAGATGATTTCGAGTTTCTTACGCAATCACAAG-TATGGGTTGCTTCGCAACGT 272 Query 2641 AACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGAACGCTGGACTTTGTTGGATAT 2700 || | |||||||| | ||| ||||||| |||||| | || ||| | || ||| Sbjct 271 TCTCGCGTTCGTCGTTGCATCGAGTCTTGTGTATATGGATCTCTTGACATGGTCGGAGTG 212 Query 2701 CCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCC 2760 |||||||||||||||| | ||||||||| |||| || || |||| || ||||| || Sbjct 211 GCTCGCTTTCCTGCTCCAGCTGAGTTTATAGCTGGTGTAATCGCTTTCTACGTTCACCCT 152 Query 2761 GTCAA 2765 ||||| Sbjct 151 GTCAA 147 >seq69920 Length=5751 Score = 96.9 bits (106), Expect = 1e-16 Identities = 196/286 (69%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 3638 TTGATATTATGGGTTTGCAAGCCGCTTATGCGCA--GCTTCACACTGAGCAGGAGCGTAC 3695 |||| || |||| ||| || ||| || ||| ||| || |||||||| || | Sbjct 4313 TTGACATCATGGATTT--AAATCGCCAATACGCTATGCTCCATACTGAGCAAGAAAGAGA 4370 Query 3696 TTACTTTATGCAGCGTTACCGTGAT---GTTATCTCCAGCTTTGGCGGTTCAACCTCCTA 3752 ||||| ||||||||||| |||||| |||| |||| ||||| || | || ||| Sbjct 4371 ATACTTCATGCAGCGTTATCGTGATGTGGTTAAGCAAGGCTTCGGCGGCTCTA-CTTCTA 4429 Query 3753 T-GATGCCGATAACCGACCGTTGCTTGTTATGCACACCGACTTCTGGGCTTCCGGTTACG 3811 | |||| |||| | || || || ||| | || || |||||||| ||||| | Sbjct 4430 TCGATGTCGATGAGCGTCCTCGCCTACTTAATCGTACTACGTTTTGGGCTTCTGGTTATG 4489 Query 3812 ACGTTGACGGTACCGACCAATCTTCCCTTGGACAATTCTCTGGTCGAGTCCAGCAGACGT 3871 | ||| | ||||| ||||| | || ||||| |||| ||||||| || || || ||| Sbjct 4490 ATGTTAATGGTACTGACCAGGCGTCACTTGGGCAATATACTGGTCGTGTTCAACAATCGT 4549 Query 3872 TTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGCATGGTGTCAT 3917 ||| || | ||||| ||||| || ||||| |||||||| || Sbjct 4550 TTACTCATAAAACTCCGCGCTTCTTTGTTCCTGAACATGGTGTTAT 4595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19325644855764