Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_001332.1 Length=6744 Score E Sequences producing significant alignments: (Bits) Value seq148732 132 2e-27 >seq148732 Length=2520 Score = 132 bits (146), Expect = 2e-27 Identities = 161/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 115 TATGATGAATCAAAAAACGGCCTTATTGTTTTAGATGAGTGTGGCACGTGGTTTAATTCC 174 ||||| ||| ||||||||||||| || || | ||||| || ||||| ||||| ||| || Sbjct 836 TATGACGAAACAAAAAACGGCCTGATCGTCCTGGATGAATGCGGCACCTGGTTCAATGCC 895 Query 175 CGCAACTGGAGTGA---TAAAAGTCGCCAGCCTGTTATAGACTGGTTTTTACATGCCCGT 231 ||| | |||| || ||| | ||| ||| | || |||||||| ||||| ||| | Sbjct 896 CGCGAGTGGAACGACCCCAAACGACGC---CCTCTGATCGACTGGTTGTTACACGCCAGA 952 Query 232 AAATTAGGCTGGGATGTAATTTTTATTATTCAGGATATTTCCCTGATGGATAAGCAGGCA 291 ||| | ||||||||| | || | || ||||| || |||||| |||| || ||||| || Sbjct 953 AAACTCGGCTGGGATTTGCTTCTGATCATTCAAGACATTTCCATGATCGACAAGCAAGCC 1012 Query 292 CGCGAGGCTTTAGCCGAACATGTTGTTTATTGCCGTCG 329 | | | | ||||||||||| ||||| |||||||| Sbjct 1013 AGGAAATCGGTTGCCGAACATGTCGTTTACTGCCGTCG 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21423967227312