Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq69920 138 4e-29 seq90441 98.7 4e-17 >seq69920 Length=5751 Score = 138 bits (152), Expect = 4e-29 Identities = 196/275 (71%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 2585 TTTAAGGATACAAAAATGTCTAACGTTCAAACATCTGCGGACCGTGTACCTCATGACTTA 2644 |||||||| | | ||||||| || | |||||| | ||| |||||||||| | Sbjct 3711 TTTAAGGAAA--ATTATGTCTATCGCTTCTACATCTTTAGGTCGTACACCTCATGACCTT 3768 Query 2645 TCTCACCTTGTCTTTGAGGCTGGTAAAATTGGCCGCCTCAAAACTATCTCTTGGACGCCT 2704 || || ||||||||||| |||||||||||||| ||||| ||||| | || | || Sbjct 3769 TCACATCTTGTCTTTGATGCTGGTAAAATTGGACGCCTTCAAACTCTTTCAGCTATTCCG 3828 Query 2705 GGTGGTGCTGGTGACTCTTTCGAGTGTGATATGGTTGGCGCTATTCGTCTGTCCCCTCTT 2764 | | |||||||||||| ||||| | | ||||| | ||||||| || || ||| Sbjct 3829 GTTATTGCTGGTGACTCATTCGAACAAAACTTAATTGGCTCACTTCGTCTATCTCCGCTT 3888 Query 2765 CGTCGTGGCCTCGCTGTTGACTCACGCGTTGATATCTTTCCTTTCTATATCCCACACCGT 2824 ||| || || |||||||| || | || ||| | || |||||||| | || || ||| Sbjct 3889 ATTCGCGGTCTGGCTGTTGATTCTCAAGTAGATGTATTCTCTTTCTATGTTCCTCATCGT 3948 Query 2825 CATATCTACGGTCAGCAGTGGATTAACTTTATGAA 2859 ||||| |||||| | | ||| || | |||||||| Sbjct 3949 CATATTTACGGTGACGAATGGGTTGAATTTATGAA 3983 Score = 114 bits (126), Expect = 5e-22 Identities = 200/286 (70%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 3171 TTGACATTATGGGCCTTCAAGCCGC--ATACGCTAAATTACATACGGAACAGGAACGTGA 3228 ||||||| |||| || || ||| |||||||| | ||||| || || ||| | || Sbjct 4313 TTGACATCATGGA--TTTAAATCGCCAATACGCTATGCTCCATACTGAGCAAGAAAGAGA 4370 Query 3229 TTACTTCATGACCCGTTACCGTGACAT---TATGAAAGAGTTCGGCGGTCATACATCCTA 3285 ||||||||| ||||| ||||| | || | ||| |||||||| ||| || || Sbjct 4371 ATACTTCATGCAGCGTTATCGTGATGTGGTTAAGCAAGGCTTCGGCGGCTCTACTTC-TA 4429 Query 3286 T-GATGGTGACAATCGTCCTCTTCTGCTCATGCGCTCTGAATTTTGGGCATCTGGCTATG 3344 | |||| || | ||||||| || || | || || |||||||| ||||| |||| Sbjct 4430 TCGATGTCGATGAGCGTCCTCGCCTACTTAATCGTACTACGTTTTGGGCTTCTGGTTATG 4489 Query 3345 ACGTAGACGGTACTGACCAATCTTCTCTCGGTCAATTCTCTGGTCGCGTTCAGCAGACCT 3404 | || | ||||||||||| | || || || |||| ||||||| ||||| || | | Sbjct 4490 ATGTTAATGGTACTGACCAGGCGTCACTTGGGCAATATACTGGTCGTGTTCAACAATCGT 4549 Query 3405 TCAATCACAAAGTCCCACGCTTCTATGTTCCTGAGCATCGCGTAAT 3450 | | ||| ||| || ||||||| ||||||||| ||| | || || Sbjct 4550 TTACTCATAAAACTCCGCGCTTCTTTGTTCCTGAACATGGTGTTAT 4595 >seq90441 Length=2660 Score = 98.7 bits (108), Expect = 4e-17 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 2099 GTCTGGATTGCTACCGACCGTTCACGCGCTCGCCGTGCTATCGAGGCTTGCGTATATGGA 2158 || ||| ||||| | | ||||| |||| ||| ||| |||||| |||| ||||||||| Sbjct 292 GTATGGGTTGCTTCGCAACGTTCTCGCGTTCGTCGTTGCATCGAGTCTTGTGTATATGGA 233 Query 2159 ACACTGGACTTTGTCGGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTC 2218 | || ||| | ||||| |||||||||||||||| | ||||||||| ||| || Sbjct 232 TCTCTTGACATGGTCGGAGTGGCTCGCTTTCCTGCTCCAGCTGAGTTTATAGCTGGTGTA 173 Query 2219 ATTGCTTATTACGTTCATCCCGTTAAC 2245 || |||| |||||||| || || ||| Sbjct 172 ATCGCTTTCTACGTTCACCCTGTCAAC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17700959378030