Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq69920 127 7e-26 seq90441 125 2e-25 seq123046 91.5 5e-15 >seq69920 Length=5751 Score = 127 bits (140), Expect = 7e-26 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 1028 CGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATT 1087 |||| || ||||||||||| ||||||| ||| ||||||| | ||||| || ||| Sbjct 3751 CGTACACCTCATGACCTTTCACATCTTGTCTTTGATGCTGGTAAAATTGGACGCCTTCAA 3810 Query 1088 ACCATTTCAACTACTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCT 1147 || ||||| ||| ||||||||| ||||| ||||| ||||| || ||||| | Sbjct 3811 ACTCTTTCAGCTATTCCGGTTATTGCTGGTGACTCATTCGAACAAAACTTAATTGGCTCA 3870 Query 1148 CTCCGTCTTTCTCCATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACT 1207 || ||||| ||||| | ||| || || ||| |||| ||| ||||| | || || Sbjct 3871 CTTCGTCTATCTCCGCTTATTCGCGGTCTGGCTGTTGATTCTCAAGTAGATGTATTCTCT 3930 Query 1208 TTTTATGTCCCTCATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAA 1260 || ||||| ||||||||||| |||| ||||| | ||| || | || ||||| Sbjct 3931 TTCTATGTTCCTCATCGTCATATTTACGGTGACGAATGGGTTGAATTTATGAA 3983 Score = 100 bits (110), Expect = 1e-17 Identities = 166/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 1610 CATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTTCTTCA--- 1666 |||||||| |||||| | || ||||||||||||||||| | |||||| || | Sbjct 4351 CATACTGAGCAAGAAAGAGAATACTTCATGCAGCGTTATCGTGATGTGGTTAAGCAAGGC 4410 Query 1667 TTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAAT 1726 || || || || ||| || | || | |||||| || | | || ||| Sbjct 4411 TTCGGCGGCTCTACTTCTATCGATGTCGATGAGCGTCCTCGCCTACTTAATCGTACTACG 4470 Query 1727 CTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCT 1786 | ||||| ||||| ||||||||| |||| |||||||| |||| | || || | | || Sbjct 4471 TTTTGGGCTTCTGGTTATGATGTTAATGGTACTGACCAGGCGTCACTTGGGCAATATACT 4530 Query 1787 GGTCGTGTTCAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGG 1845 |||||||||||||| | | || ||| ||||| |||||||||||||| ||||| Sbjct 4531 GGTCGTGTTCAACAATCGTTTACTCATAAAACTCCGCGCTTCTTTGTTCCTGAACATGG 4589 >seq90441 Length=2660 Score = 125 bits (138), Expect = 2e-25 Identities = 158/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 481 AAGATGATTTCGATTTTCTGACG-AGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGT 539 ||||||||||||| ||||| ||| | | |||| || ||| ||||| | | || ||||| Sbjct 324 AAGATGATTTCGAGTTTCTTACGCAATCACAA-GTATGGGTTGCTTCGCAACGTTCTCGC 266 Query 540 GCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTGGGATACCCTCGC 599 | |||||| ||| | ||| |||| || ||||| | || ||| | || ||| ||||| Sbjct 265 GTTCGTCGTTGCATCGAGTCTTGTGTATATGGATCTCTTGACATGGTCGGAGTGGCTCGC 206 Query 600 TTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAAC 659 ||||||||||| | ||||||||| |||| || || |||| || ||||| || |||||| Sbjct 205 TTTCCTGCTCCAGCTGAGTTTATAGCTGGTGTAATCGCTTTCTACGTTCACCCTGTCAAC 146 Query 660 ATTCAAACG---GCCTGTCTCATCATGGAAGGC 689 |||| | |||||| || ||||||||| Sbjct 145 ---CAAATGGTTGCCTGTTCAATGATGGAAGGC 116 >seq123046 Length=1983 Score = 91.5 bits (100), Expect = 5e-15 Identities = 167/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Minus Query 1610 CATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGATGTTATTT--CTTC-A 1666 |||||||| |||||||| ||||||| || ||||||| |||||| || | || | Sbjct 1906 CATACTGATGAAGAACGTACTTACTTCGCTCAACGTTACCGTGATGTCGTTCAACGTCTA 1847 Query 1667 TTTGGAGGTAAAACCTCTTATGACGCTGACAACCGTCCTTTACTTGTCATGCGCTCTAAT 1726 || |||| | ||| | ||| | ||| || || |||| ||| | ||||| | | Sbjct 1846 TTCAAAGGTGATACCACAGCTGATGTTGATAATCGCCCTTCACTATTTGGTCGCTCAAGT 1787 Query 1727 CTCTGGGCATCTGGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCT 1786 | ||||| ||||| |||||||| |||||||| | | || || | || || | | || Sbjct 1786 CAATGGGCGTCTGGTTATGATGTAGATGGAACAGGAGATACTTCCCTTGGTCAATATACT 1727 Query 1787 GGTCGTGTT-CAACAGACCTATAAACATTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGG 1845 ||||||||| || | | ||| ||| |||||| ||| |||| |||| |||||||| Sbjct 1726 GGTCGTGTTGTCACTAATAT-TAATCATCGTGTGCCTCGTCGCTTTATTCCGGAGCATGG 1668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17090911878715