Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_001730.1 Length=6089 Score E Sequences producing significant alignments: (Bits) Value seq69920 104 9e-19 seq90441 86.0 2e-13 >seq69920 Length=5751 Score = 104 bits (114), Expect = 9e-19 Identities = 192/277 (69%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 3668 GCTTCACACTGAGCAGGAGCGTACTTATTTTATGCAGCGTTACCGTGATGTTATCTC-CA 3726 ||| || |||||||| || | || || ||||||||||| |||||||| | || Sbjct 4347 GCTCCATACTGAGCAAGAAAGAGAATACTTCATGCAGCGTTATCGTGATGTGGTTAAGCA 4406 Query 3727 --GCTTTGGCGGTTCAACCTCCTAT-GATGCCGATAACCGACCGTTGCTTGTTATGCATA 3783 |||| ||||| || || || ||| |||| |||| | || || || ||| | || Sbjct 4407 AGGCTTCGGCGGCTCTACTTC-TATCGATGTCGATGAGCGTCCTCGCCTACTTAATCGTA 4465 Query 3784 CCGATTTTTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTTGGACAGT 3843 | ||||||||||| ||||| || ||| | ||||| ||||| | || ||||| || | Sbjct 4466 CTACGTTTTGGGCTTCTGGTTATGATGTTAATGGTACTGACCAGGCGTCACTTGGGCAAT 4525 Query 3844 TTTCGGGGCGAGTTCAACAGACGTTTAAACACTCAGTGCCGCGATTCTTCGTGCCTGAGC 3903 | | || || |||||||| |||||| || | ||||| ||||| || ||||| | Sbjct 4526 ATACTGGTCGTGTTCAACAATCGTTTACTCATAAAACTCCGCGCTTCTTTGTTCCTGAAC 4585 Query 3904 ATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCC 3940 ||||||| || |||| || | | || || ||||| Sbjct 4586 ATGGTGTTATCTGGACTATGCTTGTCGTGCGTTTCCC 4622 >seq90441 Length=2660 Score = 86.0 bits (94), Expect = 2e-13 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 2649 CGTCGCTGTGTAGAGGCTTGTGTTTATGGAACGCTGGACTTTGTCGGCTATCCTCGCTTT 2708 ||||| || | ||| ||||||| |||||| | || ||| | ||||| |||||||| Sbjct 262 CGTCGTTGCATCGAGTCTTGTGTATATGGATCTCTTGACATGGTCGGAGTGGCTCGCTTT 203 Query 2709 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAAC 2765 |||||||| | ||||||||| |||| || || |||| || ||||| || |||||| Sbjct 202 CCTGCTCCAGCTGAGTTTATAGCTGGTGTAATCGCTTTCTACGTTCACCCTGTCAAC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19332032442892