Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_001741.1 Length=4877 Score E Sequences producing significant alignments: (Bits) Value seq154158 111 5e-21 seq117558 96.9 1e-16 seq36439 93.3 1e-15 seq8165 91.5 5e-15 seq152702 82.4 2e-12 >seq154158 Length=1639 Score = 111 bits (122), Expect = 5e-21 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 4481 CCGTCGGTTATGAAGAATCGTTTTTCAGAGGTACCGACAGCTACGATTAGGCGTTCAAGT 4540 || || ||||||||| || |||||| | || || | |||| ||| |||||| | Sbjct 1455 CCTTCAGTTATGAAGCATGATTTTTCTAAAGTTCCAAGTGCTAATATTCAGCGTTCTAAG 1514 Query 4541 TTTGATCGGTCTCACGGTTATAAGACTACGTTTGATATGGATTATTTAGTTCCATTTTTT 4600 ||||||||| ||| || |||||||| || || ||| || |||||| || || ||||| Sbjct 1515 TTTGATCGGAGTCATGGATATAAGACGACTTTAGATGCGGGTTATTTGGTACCTGTTTTT 1574 Query 4601 GTTGATGAAGTTCTTCCTGGAGATACTTT 4629 |||||||||||| | |||||||||||||| Sbjct 1575 GTTGATGAAGTTTTGCCTGGAGATACTTT 1603 >seq117558 Length=7756 Score = 96.9 bits (106), Expect = 1e-16 Identities = 181/262 (69%), Gaps = 12/262 (5%) Strand=Plus/Minus Query 4503 TTTCAG--AGGTACCGACAGCTACGATTAGGCGTTCAAGTTTTGATCGGTCTCACGGTTA 4560 |||||| | || |||| |||| |||| ||||| ||||||||| ||||||||| Sbjct 1017 TTTCAGCAATGTGCCGAAAGCTGAGATTCCTCGTTCTTCTTTTGATCGTTCTCACGGTCT 958 Query 4561 TAAGACTACGTTTGATATGGATTATTTAGTTCCATTTTTTGTTGATGAAGTTCTTCCTGG 4620 || || |||||||| | | | || |||| ||||||| ||||| || ||||| || Sbjct 957 GAAAACAACGTTTGACGCCGGTAAATTGATTCCGATTTTTGTGGATGAGGTGCTTCCCGG 898 Query 4621 AGATACTTTTTCTTT--ATCGGAGACGCATCTTTGTCGTTTGACTACGTTAGTTCAACCG 4678 ||||| ||| ||| || || || || |||| ||| | ||| | |||| ||| Sbjct 897 TGATACGTTTAATTTGAATATGACCGGCTTCG--GTCGCTTGGCGACGCCACTTCATCCG 840 Query 4679 ATTATGGATAATATTCAGTTAACTACTCAGTTTTTCTTT---GTTCCCAATCGTTTGCTT 4735 || ||||||||||| | | || |||||||||| || || || || || || Sbjct 839 ATCATGGATAATATGTACCTCGAAAC---GTTTTTCTTTTTCGTGCCAAACCGACTGGTT 783 Query 4736 TGGGATAATTGGGAATCGTTTA 4757 ||||| || |||||| ||||| Sbjct 782 TGGGACAACTGGGAAAAGTTTA 761 >seq36439 Length=4110 Score = 93.3 bits (102), Expect = 1e-15 Identities = 179/264 (68%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 1095 TTTGGTTATCAAGAGCGTTATGCTGAGTATCGTTATAAGCCTTCGAAGGTTACTGGATTA 1154 ||||| ||||| || || ||||| || ||||||||||| || || | |||| || Sbjct 1227 TTTGGATATCAGGAACGATATGCAGAATATCGTTATAAACCATCACAAATTACAGGTGCT 1286 Query 1155 TTTAGATCTAACGCTACAGGTACTCTAGATTCTTGGCATTTGTCTCAGAATTTTGCGAAT 1214 || || || | ||| | | || | ||| ||||||||||||| ||| | || | Sbjct 1287 TTCAGGTCGGATGCTTCGGCGTCTTTGGATACTTGGCATTTGTCCCAGGACTTCGGTTCG 1346 Query 1215 TTACCTACTTTGAATGAGACTTTTATTCAGAGTAATACGCCGATAGATAGAGCGTTAGCA 1274 || || || |||||| | || || ||| || ||| |||| || ||| | | | | ||| Sbjct 1347 TTGCCAACGTTGAATCAAACATTCATTGAGGAAAATCCGCCCATTGATCGTGTGATTGCA 1406 Query 1275 GTTCCTGATCAGCCTGATTTTATTTGTGACTTTTACTTTAATTATCGTTGTATTAGGCCT 1334 ||| | | || | |||||| ||| || |||||| || ||| | |||| Sbjct 1407 ACACCTACTGAACCACACATTATTTTTGATGCTTTCTTTAACCTTCAGTGTGCTCGGCCG 1466 Query 1335 ATGCCGGTGTATTCTGTTCCAGGT 1358 |||||| |||| |||||||||||| Sbjct 1467 ATGCCGATGTACTCTGTTCCAGGT 1490 >seq8165 Length=2345 Score = 91.5 bits (100), Expect = 5e-15 Identities = 192/286 (67%), Gaps = 34/286 (12%) Strand=Plus/Minus Query 921 GCGGATTTAACTTATCAGCAAGG--TTTAGAGCGTCAGTGGTCAAGATTTAGTCGTTATG 978 || |||||||||||||||||||| || || | || || |||| |||| | Sbjct 960 GCTGATTTAACTTATCAGCAAGGGATTCCTAGGAT--GTTTTCTAGATCAGAGCGTTTCG 903 Query 979 ATTATTATTGGCCTACTTTTGCTCATTTGGGAGAGCAGCCTGTTTATAATAAAGAGATTT 1038 ||| ||||||||| || |||||||| | ||||||||| || || |||||||||||||| Sbjct 902 ATTTATATTGGCCTGCTCTTGCTCATCTTGGAGAGCAGTCTATTCTTAATAAAGAGATTT 843 Query 1039 ATTGCCAATCAGATACTGTTATGGATCCTAGTGGTTCTGCGGTTAATGATGTGCCTTTTG 1098 || || || ||| ||| || | | |||| || ||||| Sbjct 842 ATGCTCA---AGGTAC------------------TTCAGCTGATGATGAAGT---TTTTG 807 Query 1099 GTTATCAAGAGCGTTATGCTGAGTATCGTTATAAGCCTTCGAAGGTTACTGGATTATTTA 1158 | ||||| || || | ||||||||| | ||| | || || || |||||||| ||| Sbjct 806 GATATCAGGAACGCTGGGCTGAGTATAGGTATTATCCGTCAAAAATTACTGGACAATTGC 747 Query 1159 GATCTA---ACGCTACAGGTACTCTAGATTCTTGGCATTTGTCTCA 1201 |||||| | || ||| || ||||| |||||||||||||| Sbjct 746 GATCTACTTATGCGACA---TCTTTAGATGTATGGCATTTGTCTCA 704 >seq152702 Length=1717 Score = 82.4 bits (90), Expect = 2e-12 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 4545 ATCGGTCTCACGGTTATAAGACTACGTTTGATATGGATTATTTAGTTCCATTTTTTGTTG 4604 ||||| ||| || |||||||| || || ||| || |||||| || || ||||||||| Sbjct 1316 ATCGGAGTCATGGATATAAGACGACTTTAGATGCGGGTTATTTGGTACCTGTTTTTGTTG 1375 Query 4605 ATGAAGTTCTTCCTGGAGATACTTT 4629 |||||||| | |||||||||||||| Sbjct 1376 ATGAAGTTTTGCCTGGAGATACTTT 1400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15465183202530