Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_001954.1 Length=8454 Score E Sequences producing significant alignments: (Bits) Value seq148732 78.8 5e-11 >seq148732 Length=2520 Score = 78.8 bits (86), Expect = 5e-11 Identities = 147/216 (68%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 2729 CTATGATGAAAATAAAAATGGATTACTGGTTCTTGATGAATGTGGGACATGGTTTAACTC 2788 |||||| |||| ||||| || | | || || |||||||| || || ||||| || | Sbjct 835 CTATGACGAAACAAAAAACGGCCTGATCGTCCTGGATGAATGCGGCACCTGGTTCAATGC 894 Query 2789 ACGCTCATGGGCTGATAAAGAAAGACAGTCCGTAATTAACTGGTTTTTACATGCCAGAAA 2848 ||| ||| || || ||| | | || ||||||| ||||| |||||||| Sbjct 895 CCGCGAGTGGAACGACCCCAAACGACGCCCTCTGATCGACTGGTTGTTACACGCCAGAAA 954 Query 2849 ACTGGGCTGGGATATTATTTTTCTTATTCAGGATTTATCCATCATGGATAAGCAAGCTCG 2908 ||| ||||||||| | || | | ||||| || | ||||| || || |||||||| | Sbjct 955 ACTCGGCTGGGATTTGCTTCTGATCATTCAAGACATTTCCATGATCGACAAGCAAGCCAG 1014 Query 2909 TGTGGCACTGGCAGAGCATGTCGTTTATTGCCGACG 2944 | | || || ||||||||||| ||||| || Sbjct 1015 GAAATCGGTTGCCGAACATGTCGTTTACTGCCGTCG 1050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26885354221752