Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_002180.1 Length=4532 Score E Sequences producing significant alignments: (Bits) Value seq59597 161 3e-36 seq160671 147 6e-32 seq6488 141 3e-30 seq172159 122 2e-24 seq36439 102 2e-18 seq172111 95.1 3e-16 seq172220 80.6 8e-12 >seq59597 Length=4602 Score = 161 bits (178), Expect = 3e-36 Identities = 301/435 (69%), Gaps = 8/435 (2%) Strand=Plus/Plus Query 1052 CTTCGTGAAGCTTTCCAATTGCAAAAGCTTTATGAGAGAGATGCTCGTGGCGGAACAAGG 1111 || |||||||| ||||| | ||||| | |||| | || |||||| || || || Sbjct 2447 CTGCGTGAAGCGTTCCAGGTACAAAAAATGCTTGAGCGTGACGCTCGTTCAGGTACTCGG 2506 Query 1112 TACATTGAGATTATTCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGT 1171 |||| |||||| || | | ||||| |||| || || ||||| ||| | ||||| Sbjct 2507 TACACTGAGATCATCCAAGCTCATTTTGGTGTGACCTCGCCGGATGCCAGGCTTCAACGC 2566 Query 1172 GCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCC 1231 | || || ||||| || ||||| | ||| || || |||| | || ||||| Sbjct 2567 CCTGAATACCTTGGTGGAGGATCAACCCGTGTCAACGTTAATCCGGTGCCTCAGACAAGT 2626 Query 1232 TCAACAGACTCCACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGC--GATTGGAT 1289 || || || | ||| | || ||||| || ||||| |||| |||||| | | || ||| Sbjct 2627 TCTACGGATGCTACAACGCCACAAGGCAACCTTGCGGCTTTTGGTACTGTTGGGTTCGAT 2686 Query 1290 CGAAGCGAGTCTTCACAAAGTCTTTCACAGAACATGGTGTAATTCTTGGATTAGCCTCTG 1349 || | | ||| || || || |||||||| ||||| ||| | || | || | | Sbjct 2687 CGT--CATGGCTTTACTAAATCCTTCACAGAGCATGGACATATTATCGGTATTGCTTGCG 2744 Query 1350 TACGCGCCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACG-AAGAACGCGC 1408 | || |||||||| | ||||||||||||| | | | ||||||||||| || | || Sbjct 2745 TTCGGGCCGATCTGACCTATCAGCAAGGTCTCAACCGTATGTGGTCACGTCAGGA-TCGG 2803 Query 1409 TGGGACTTTTACTGGCCTGCTCTTAGC-CATTTAGGTGAGCAAGCTGTGCTCAATAAAGA 1467 | |||||||| |||||||| || || ||||| ||||| ||||| || |||||||| || Sbjct 2804 TACGACTTTTATTGGCCTGC-ATTGGCTCATTTGGGTGAACAAGCGGTACTCAATAAGGA 2862 Query 1468 GATCTATTGCCAAGG 1482 ||| ||| ||||| Sbjct 2863 GATTTATGCACAAGG 2877 >seq160671 Length=4645 Score = 147 bits (162), Expect = 6e-32 Identities = 489/762 (64%), Gaps = 38/762 (5%) Strand=Plus/Minus Query 1059 AAGCTTTCCAATTGCAAAAGCTTTATGAGAGAGATGCTCGTGGCGGAACAAGGTACATTG 1118 ||||||| ||| | || || | | || | ||||||| | ||||| || || || | | Sbjct 3122 AAGCTTTTCAAGTACAGAAATTATTGGAAAAAGATGCTAGAGGCGGTACTAGATATACAG 3063 Query 1119 AGATTATTCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGTGCAGAGT 1178 | |||||| | ||||| ||| || |||||| | | | ||| | |||||| Sbjct 3062 AAATTATTAGAGGTCATTTTGGTGTAACTTCACCAGATCAACGACTTCAAAGACCAGAGT 3003 Query 1179 ATCT---TGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCCTCAA 1235 || | |||||| ||||| | | || ||||| || | ||||||| || |||| Sbjct 3002 ATTTAGGTGGAGGCTCTTCC---CAAATTAACATTTCACCCGTAGCACAGACGTCGTCAA 2946 Query 1236 CAGACTCCACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGCGATTGGATCGAAGC 1295 ||||| | ||| | |||||||||||| | | |||| |||||| | |||| Sbjct 2945 CAGACGCAACAACACCTCAAGGAAATTTATCAGCTTTTGGTACTACAGGTGGAAGACTTG 2886 Query 1296 GAGTCTTCACAAAGTCTTTCACAGAACATGGTGTAATTCTTGGATTAGCCTCTGTACGCG 1355 | | ||||| ||| ||| ||||||||| |||| | | ||| |||| | ||| | | Sbjct 2885 GTGGATTCACTAAGAGTTTTACAGAACATTGTGTTTTATTAGGACTAGCATGTGTGAGAG 2826 Query 1356 CCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGGGACT 1415 | ||||| | ||||| ||||||| || | | ||||||||| ||| || | || | Sbjct 2825 CTGATCTTACTTATCAAGAAGGTTTAGACCGCAAATGGTCACGACAAACACGGTACGATT 2766 Query 1416 TTTACTGGCCTGCTCTTAGC-CATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGATCTAT 1474 |||| ||||| | ||||| ||| | || || |||||||| | || |||||||| || Sbjct 2765 TTTATTGGCCATC-ATTAGCTCATATTGGCGAACAAGCTGTATTAAACAAAGAGATTTA- 2708 Query 1475 TGCCAAGGTCCTGCAGTTAAGGATGCTCAGAATGGTAATGTTGTTGTGGATGAGCAAGTC 1534 ||||| | ||| | |||| | ||||| | || Sbjct 2707 -----------TGCAG--ATGGAAGTTCAGCA----------------GATGAAGATGTT 2677 Query 1535 TTTGGATATCAGGAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATCACTGGGAAG 1594 ||||| |||||||| |||| || || ||| | ||| |||| ||||| || || | Sbjct 2676 TTTGGTTATCAGGAAAGATATGGAGAATATAGATATTTTCCTTCAAAAATTACAGGATTG 2617 Query 1595 TTCCGATCAAATGCTACAGGTTCTTTAGATGCATGGCATTTAGCTCAGCAGTTTGAGAAT 1654 || || ||||| || | || | ||| |||||| | |||| | |||| Sbjct 2616 TTTAGAAGCAATGCAACTGCATCACTTGATTATTGGCATCTTTCTCAAGAATTTGGTTCG 2557 Query 1655 CTTCCAACACTTTCTCCAGAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTTGTTGCT 1714 | ||||||||| | || || |||||||||| ||| | || | || |||| Sbjct 2556 TTACCAACACTTAATGATTCTTTCATACAAGAAAATCCACCTGTAAATAGAGTAATTGCA 2497 Query 1715 GTAGATACTGAGCCAGATTTTCTCTTAGATGGTTGGTTTTCATTGCGTTGTGCAAGACCA 1774 | | ||||||| | || || || ||| | | ||| || |||||| Sbjct 2496 ACACCTGATGAGCCACACTTGCTGTTTGATTCATATATAGAATTAATAACAGCCAGACCA 2437 Query 1775 ATGCCTGTCTATTCTGTTCCAGGTCTTATTGATCATTTCTAA 1816 ||||| || ||||||||||||||||| || |||||||||||| Sbjct 2436 ATGCCAGTTTATTCTGTTCCAGGTCTAATCGATCATTTCTAA 2395 >seq6488 Length=2331 Score = 141 bits (156), Expect = 3e-30 Identities = 237/338 (70%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 1148 TCTCCAGATGCAAGGTTGCAACGTGCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAAT 1207 || || ||||| ||| | |||||| | || || ||||| || ||||| | ||| ||| Sbjct 1582 TCACCTGATGCGAGGCTACAACGTCCTGAATACCTTGGTGGAGGATCAACCCGTGTCAAT 1523 Query 1208 ATTTCTCCGATTCCACAGACTTCCTCAACAGACTCCACATCTCCTCAAGGAAATCTTGCT 1267 |||| || |||| || ||||| || ||||| | || |||| || || ||||||||| Sbjct 1522 GTTTCGCCTGTTCCTCAAACTTCTTCTACAGATGCGACCACTCCCCAGGGCAATCTTGCT 1463 Query 1268 GCTTATGGTACAG--CGATTGGATCGAAGCGAGTCTTCACAAAGTCTTTCACAGAACATG 1325 |||| ||||| | | || ||||| | | || || ||||||||||| ||||| | Sbjct 1462 GCTTTCGGTACTGTCGGTTTCGATCG--CCATGGTTTTACTAAGTCTTTCACCGAACACG 1405 Query 1326 GTGTAATTCTTGGATTAGCCTCTGTACGCGCCGATCTCAACTATCAGCAAGGTTTGGATA 1385 || || ||||| | || | ||| | |||||| | | |||||||||||| || | Sbjct 1404 GTCACATCATTGGAATTGCGTGTGTTAGAGCCGATATTACCTATCAGCAAGGACTGAACC 1345 Query 1386 GGATGTGGTCACG-AAGAACGCGCTGGGACTTTTACTGGCCTGCTCTTAGCCATTTAGGT 1444 | |||||||| || || || || | || ||||| |||||||| ||| || | || Sbjct 1344 GCATGTGGTCTCGCCAGGAC-CGGTATGATTTTTATTGGCCTGCACTTGCTCACCTGGGC 1286 Query 1445 GAGCAAGCTGTGCTCAATAAAGAGATCTATTGCCAAGG 1482 || ||||| || || ||||| || || ||| ||||| Sbjct 1285 GAACAAGCCGTACTGAATAAGGAAATTTATGCACAAGG 1248 >seq172159 Length=4363 Score = 122 bits (134), Expect = 2e-24 Identities = 353/543 (65%), Gaps = 9/543 (2%) Strand=Plus/Plus Query 1060 AGCTTTCCAATTGCAAAAGCTTTATGAGAGAGATGCTCGTGGCGGAACAAGGTACATTGA 1119 ||| || ||| | || | || || ||| |||| ||||||||||| ||| | || | || Sbjct 3687 AGCGTTTCAACTACAGAGACTATACGAGCGAGACGCTCGTGGCGGGACACGTTATACAGA 3746 Query 1120 GATTATTCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGTGCAGAGTA 1179 ||| | || || || || || || || || || | | ||| | | || || Sbjct 3747 AATTGTGCGATCGCACTTTGGCGTTGTTTCGCCCGACGCTCGCCTACAAAGACCTGAATA 3806 Query 1180 TCTTGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCCTCAACAGA 1239 || || ||| ||| | | | |||||| || ||| | || || || || || || Sbjct 3807 CCTCGGTGGTGGCTCACAACTTATTTCTATTTCCCCTATTGCTCAAACATCATCCACCGA 3866 Query 1240 CTCCACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGCGATTGGATCGAAGCGAGT 1299 || ||| | || ||||| || || |||||| ||||| | | || || | | Sbjct 3867 TTCTACAACCCCACAAGGTAACCTAGCTGCTATGGGTACCGTTACTGTTTCTGGACATGG 3926 Query 1300 CTTCACAAAGTCTTTCACAGAACATGGTGTAATTCTTGGATTAGCCTCTGTACGCGCCGA 1359 |||||||| || || || || ||| |||| || || ||| | | ||| || || || Sbjct 3927 ATTCACAAAATCCTTTACGGAGCATTGTGTTATCCTGGGAATGGTAAATGTTCGTGCAGA 3986 Query 1360 TCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGGGACTTTTA 1419 | | ||| || ||||| || | || |||| || |||| | ||||||| ||| Sbjct 3987 CATTACCTACCAACAAGGCTTAAACAGAATGTTTAGCCGGCGAACTAGGTGGGACTATTA 4046 Query 1420 CTGGCCTGCTCTTAGCCATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGATCTATTGCCA 1479 |||||| ||||| ||| ||||||||||||| | ||||| || || || ||| || Sbjct 4047 TTGGCCTTCTCTTGCCCACCTAGGTGAGCAAGCAATCCTCAACAAGGAAATATATGCACA 4106 Query 1480 AGGTCCTGCAGTTAAGGATGCTCAGAATGGTAATGTTGTTGTGGATGAGCAAGTCTTTGG 1539 ||| || || |||| | ||| || ||||| ||||| || ||||| Sbjct 4107 AGGAAGTGATGTACTCGATG------ACGGTGATATTGTT---GATGACATGGTATTTGG 4157 Query 1540 ATATCAGGAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATCACTGGGAAGTTCCG 1599 ||| || ||||||||||| || || || |||||| | || | ||||| || || || | Sbjct 4158 ATACCAAGAGAGATTTGCTGAATACCGTTATAAGCCATCAATTATCACAGGTAAATTTAG 4217 Query 1600 ATC 1602 ||| Sbjct 4218 ATC 4220 >seq36439 Length=4110 Score = 102 bits (112), Expect = 2e-18 Identities = 200/295 (68%), Gaps = 3/295 (1%) Strand=Plus/Plus Query 1523 GATGAGCAAGTCTTTGGATATCAGGAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAA 1582 |||||| || |||||||||||||| ||| ||| || ||||| ||||| | || || Sbjct 1218 GATGAG---GTGTTTGGATATCAGGAACGATATGCAGAATATCGTTATAAACCATCACAA 1274 Query 1583 ATCACTGGGAAGTTCCGATCAAATGCTACAGGTTCTTTAGATGCATGGCATTTAGCTCAG 1642 || || || ||| | || ||||| | | ||||| ||| | |||||||| | ||| Sbjct 1275 ATTACAGGTGCTTTCAGGTCGGATGCTTCGGCGTCTTTGGATACTTGGCATTTGTCCCAG 1334 Query 1643 CAGTTTGAGAATCTTCCAACACTTTCTCCAGAGTTTATCGAAGAAAATCCTCCTATGGAT 1702 | || | | ||||| | || | || || || |||||||| || || ||| Sbjct 1335 GACTTCGGTTCGTTGCCAACGTTGAATCAAACATTCATTGAGGAAAATCCGCCCATTGAT 1394 Query 1703 CGTGTTGTTGCTGTAGATACTGAGCCAGATTTTCTCTTAGATGGTTGGTTTTCATTGCGT 1762 ||||| |||| | |||||| ||| | || | || |||| || ||| | | Sbjct 1395 CGTGTGATTGCAACACCTACTGAACCACACATTATTTTTGATGCTTTCTTTAACCTTCAG 1454 Query 1763 TGTGCAAGACCAATGCCTGTCTATTCTGTTCCAGGTCTTATTGATCATTTCTAAT 1817 ||||| | || ||||| | || |||||||||||||||||||| || |||| || Sbjct 1455 TGTGCTCGGCCGATGCCGATGTACTCTGTTCCAGGTCTTATTGACCACTTCTGAT 1509 >seq172111 Length=4147 Score = 95.1 bits (104), Expect = 3e-16 Identities = 285/438 (65%), Gaps = 3/438 (1%) Strand=Plus/Plus Query 1040 ACGATTAATTCTCTTCGTGAAGCTTTCCAATTGCAAAAGCTTTATGAGAGAGATGCTCGT 1099 || |||||| ||||| |||||||| ||| | ||||| | ||||| | ||||||||| Sbjct 3312 ACTATTAATCAACTTCGAGAAGCTTTTCAAATTCAAAAAATGTATGAAAAGGATGCTCGT 3371 Query 1100 GGCGGAACAAGGTACATTGAGATTATTCGTTCCCATTTCAATGTGCAGTCTCCAGATGCA 1159 || || || | || | ||| |||||||| | || ||| ||| || || ||||| Sbjct 3372 GGTGGTACTCGTTATACTGAACTTATTCGTGCTCACTTCGGTGTTACTTCACCTGATGCT 3431 Query 1160 AGGTTGCAACGTGCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATT 1219 | || |||||| |||| ||||| || ||| | | | | |||||| || ||| Sbjct 3432 CGTTTACAACGTCCAGAATATCTCGGCGGTGGAACTATGCACTTAAATATTAACCCTATT 3491 Query 1220 CCACAGACTTCCTCAACAGA--CT-CCACATCTCCTCAAGGAAATCTTGCTGCTTATGGT 1276 | || | || | || || || | |||||||||| || ||||| ||| ||| Sbjct 3492 GCTCAAAACTCTGCTACTGATGCTGGTGGAACTCCTCAAGGTAACCTTGCCGCTATGGGT 3551 Query 1277 ACAGCGATTGGATCGAAGCGAGTCTTCACAAAGTCTTTCACAGAACATGGTGTAATTCTT 1336 || ||| || | | || | ||| ||||| || ||||||| | | || Sbjct 3552 ACTTTCCAAGGAAACAACCTTGGTTTTATAAAATCTTTTACTGAACATGAACTGGTCTTT 3611 Query 1337 GGATTAGCCTCTGTACGCGCCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCA 1396 || || |||| || || ||||| ||||| || |||||| | | | |||||| | Sbjct 3612 GGTTTTATTTCTGCTCGTGCTGATCTTAACTACCAACAAGGTCTTAACCGTATGTGGACT 3671 Query 1397 CGAAGAACGCGCTGGGACTTTTACTGGCCTGCTCTTAGCCATTTAGGTGAGCAAGCTGTG 1456 || ||| |||| || ||||||||| || || | | |||||||||||| | Sbjct 3672 CGCCAAACTCGCTTCGATCATTACTGGCCGTCTTTTGCTAACCTCGGTGAGCAAGCTATC 3731 Query 1457 CTCAATAAAGAGATCTAT 1474 || || || || || ||| Sbjct 3732 CTTAACAAGGAAATTTAT 3749 >seq172220 Length=4696 Score = 80.6 bits (88), Expect = 8e-12 Identities = 122/174 (70%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 1301 TTCACAAAGTCTTTCACAGAACATGGTGTAATTCTTGGATTAGCCTCTGTACGCGCCGAT 1360 ||||| ||||| || |||||||||||| || | ||| | || | || |||| ||| Sbjct 1861 TTCACTAAGTCCTTTACAGAACATGGTTATGTTATCGGACTTGCATGTGCTCGCGGAGAT 1920 Query 1361 CTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGGGACTTTTAC 1420 | | ||||| ||||| || |||| ||||||||||| ||| || |||||||| | | Sbjct 1921 ATTACTTATCAACAAGGCTTAAATAGAATGTGGTCACGTCAAACCCGATGGGACTTCTTC 1980 Query 1421 TGGCCTGCTCTTAGCCATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGATCTAT 1474 |||||| ||| | | || || |||| | | |||||||| |||||| Sbjct 1981 TGGCCTAAACTTCAAGAACTCGGAGAACAAGAAATCTTAAATAAAGAAATCTAT 2034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14363264944605