Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_002643.1 Length=4594 Score E Sequences producing significant alignments: (Bits) Value seq172220 316 6e-83 seq172143 241 4e-60 seq172111 78.8 3e-11 >seq172220 Length=4696 Score = 316 bits (350), Expect = 6e-83 Identities = 563/797 (71%), Gaps = 37/797 (5%) Strand=Plus/Plus Query 813 CATA-GCAGACCTATCCTCTGCAACAGCCGCAACCATCAACCAACTAAGACAAGCAATGA 871 |||| |||||| || | |||||||| ||||| || |||||| | ||||||| || | Sbjct 1565 CATATGCAGACTTAACAGAAGCAACAGCTGCAACTATTAACCAATTCCGACAAGCTATTA 1624 Query 872 TGATGCAATCTCTGCTTGAACTCGACGCACGCGGTGGAACACGCTATGTTGAAATTCTTA 931 ||||||| || | | ||| | |||||| | |||||||| || || || |||||| | | Sbjct 1625 TGATGCAGTCATTATTGGAATTAGACGCAAGAGGTGGAACCCGTTACGTCGAAATTTTAA 1684 Query 932 AATCTCACTTCAACGTCATTAGTCTTGACTTCCGCCTACAACGTCCAGAATATCTATCTG 991 || | || ||||||||| | |||| |||||||| |||||| | ||||||| ||| ||| Sbjct 1685 AAGCACATTTCAACGTCGTAAGTCCAGACTTCCGACTACAAAGACCAGAATTTCTTTCTT 1744 Query 992 GCGGAACTATTGATCTCCAACAGAATCCAGTTCCACAAACGTCTTCATCAAC-AACG-GA 1049 ||| || | || | | || |||| || |||||||| |||| ||| ||| | Sbjct 1745 CCGGTACAACTGTAATAAATCAACATCCCGTGCCACAAAC---TTCAGAAACTAACACGT 1801 Query 1050 CAGCCCACAAGGTAACCTCGCCGCCTTCTCAACGGCCTCAGAATTCGGAAACAAAATCGG 1109 ||||||| || | || || |||| |||||| || || | | |||||||| || || Sbjct 1802 CAGCCCA--AGCAACACTTGCAGCCTACTCAACAGCAGCACAGCTTGGAAACAACATTGG 1859 Query 1110 ATTCTCAAAATCGTTCGTAGAACACGGATATGTCCTAGG-CTT-CATCAGAGCCCGTGGA 1167 ||| | || || || |||||| || ||||| | || ||| ||| | || || ||| Sbjct 1860 TTTCACTAAGTCCTTTACAGAACATGGTTATGTTATCGGACTTGCAT--GTGCTCGCGGA 1917 Query 1168 CAAGTAACCTACCAACAAGGCCTTCACAAAATGTGGTCACGTCAAACAAGATGGGACTTC 1227 | | || || ||||||||| | | | |||||||||||||||||| ||||||||||| Sbjct 1918 GATATTACTTATCAACAAGGCTTAAATAGAATGTGGTCACGTCAAACCCGATGGGACTTC 1977 Query 1228 TTCTGGCCTAAATTCCAAGAACTCGGTGAACAAGCTATCCTTAACAAAGAAATC--TACG 1285 |||||||||||| | ||||||||||| ||||||| ||| | || ||||||||| || | Sbjct 1978 TTCTGGCCTAAACTTCAAGAACTCGGAGAACAAGAAATCTTAAATAAAGAAATCTATATG 2037 Query 1286 CA--CA-----AGGAAATGCT-ACC--GACTCGGAAATCTTCGGCTATCAAGAAAGATAC 1335 || || | |||| | | | ||| | | ||||| |||||||||||||| Sbjct 2038 CAATCAGATGGACCAAATTATGAGCAAGACAATGCTGTTTTCGGTTATCAAGAAAGATAT 2097 Query 1336 GGTGAATACCGCTTCCGTCCATCTGAAATTAAAGGACAATTCCGCTCTAACTTCGCTGA- 1394 | ||||| | | ||||| ||||||| ||||||||||||||| |||| || || Sbjct 2098 GCAGAATATAGATATAAACCATCAGAAATTAGAGGACAATTCCGCTCAAACTATGCAGAT 2157 Query 1395 AAGCTTAGACGTATGGCACCTTGCCGAATACTTC-ACAGTGAAACCATCACTGAACAAAA 1453 |||| ||||||||||| | || ||| | ||| || | |||| |||| || || Sbjct 2158 TCGCTT-GACGTATGGCATATAGCAGAAGAGTTCGACTCT-TTACCAGCACTAAATGGAA 2215 Query 1454 CTTTCATTGAAAGCAACACACCAATCGAGCGATCTCTCGTAGTAACTCGCCCAGATTATC 1513 | || || ||| || || || ||||| |||| || | ||||| || ||| | Sbjct 2216 CCTTTATCGAATCTAATACTCCGATCGAAAGATCACTTGCGGTAAC---AGAAGGTTACC 2272 Query 1514 CAGATCT--TATCGGAGACTTCTGGTT-CGACTACACTCACGTTAGACCAATGGTCACTT 1570 | || | ||| || | ||||| | |||| | |||||||||||| ||||| |||| Sbjct 2273 CTCATTTACTATTCGATGGT--TGGTTCCAACTA-AATCACGTTAGACCGATGGTTACTT 2329 Query 1571 ACGGAGTACCAGCTACA 1587 | ||||| ||||| ||| Sbjct 2330 ATGGAGTTCCAGCAACA 2346 Score = 147 bits (162), Expect = 6e-32 Identities = 395/591 (67%), Gaps = 21/591 (4%) Strand=Plus/Plus Query 25 CAACACAGCTTCGCACAGATCCCAAGCGTTCACACAACTCGCTCAAAATTCAACCGCTCC 84 |||||| ||||| ||||| || || || | ||| | |||||||| | || || Sbjct 700 CAACACTCGTTCGCTCAGATACCGAGTGTAAATACACAAAGATCAAAATTTGATCGTTCA 759 Query 85 --TTCGGAACTAAAGACACCTTCAAATTCGATGACCTGACACCAATCTTCATCGACGAGA 142 | | | | |||||||| ||||| || || || | |||||| || || || || | Sbjct 760 CATGCCGTA--AAAGACACTTTCAACTTTGACGAATTAGTACCAATATTTATAGATGAAA 817 Query 143 TCCTACCCGGTGACACAATCAACATGAACACAAAAACATTCATCCGACTTGCGACTCAAG 202 | ||||||| |||||||| ||| | | | ||| | || ||| | || || |||| Sbjct 818 TTATACCCGGCGACACAATGAACCTAACCCTTAAATCTTTTGCACGATTAGCAACGCAAG 877 Query 203 TAGTCCCTGTTATGGACAGAATGATGCTCGACTTCTATTTCTTCTTCGTCCCTTGCCGAC 262 | || || |||||||||| ||| | || | | ||||||||||| ||| || Sbjct 878 TTGTTCCAGTTATGGACAACATGTATATAGATTATTTCTTCTTCTTCGTGCCTAATAGAT 937 Query 263 TAGTATGGGACAACTGGGAAAAATTCAACGGAGCACAAGACAACCCATCGGACTCA--AC 320 |||||||||||||||||||||||||||| |||||||||||| | || |||| || || Sbjct 938 TAGTATGGGACAACTGGGAAAAATTCAATGGAGCACAAGACGATCC--CGGAGACAGTAC 995 Query 321 GGACTATTTGATCCCAACAATCAC-AGCACCCGCTGGTGGCTTCGAAAACATGTCCATCT 379 |||||| | ||||| || | || | | | | | || || | || || | Sbjct 996 TGACTATCTCATCCCTTCAGTAACTATTA----ATAAT-GTATCCAATGGAAGT--ATAT 1048 Query 380 ACGATCACTTCGGAATTCCGACACAAGTTGCAAAT-CTCGAGA--TAAATGCTCTACCTT 436 ||||||| ||||| || || ||| |||||| | | || | | | ||| | || |||| Sbjct 1049 ACGATCATTTCGGTATACCCACAGAAGTTGTAGGTACTACATATGTCAATTCACTTCCTT 1108 Query 437 TCAGAGCTTACAATCTTATCTATAACGACTGGTTCCGAGACCAAAATCTTATCGGA-AAA 495 | ||||| |||||| | || | ||||| ||||| || || ||||| |||| || Sbjct 1109 TTAGAGCATACAATTTAATATGGAACGAATGGTTTCGTGATCAAAA-CTTACAAGACTCT 1167 Query 496 ATCGCCGTTCCTAAAGGAGACGGACCAGACAACCACGCGGACTATCAACTACTCAAAGCC 555 ||| | || ||| ||| | | || | | |||| | | || ||| Sbjct 1168 ATCACTGTAAACAAAACAGATGTATTCGATTCTCCAACTGACTTTGAGTTAAAAAAACGA 1227 Query 556 GCAAAACCGCACGACTACTTCACAAGCGCACTACCTTGGCCACAAAAAGGC 606 | ||| |||||||| ||||| || ||| |||||||||||||||||||| Sbjct 1228 GGTAAAAGACACGACTATTTCACTAGTGCATTACCTTGGCCACAAAAAGGC 1278 Score = 143 bits (158), Expect = 8e-31 Identities = 254/363 (70%), Gaps = 17/363 (5%) Strand=Plus/Plus Query 3515 CATGAAAAGAAAACCAATGAGCCGCAAGGCCTCTCAAAAAACCTTCAAAAAGAACACAGG 3574 |||||||||| | || | ||||||||||| || ||| || || ||||||||||| || Sbjct 4257 CATGAAAAGACGATCAGTTAGCCGCAAGGCATCAAAAAGAATATTTAAAAAGAACACTGG 4316 Query 3575 CGTTCAACGCATGAACCATCTCAACCCACGCGCCATGCGTGGTGGCATTAGACTATaaaa 3634 ||||| | | ||||| | ||||||||| | | | ||||| || ||| ||||||| Sbjct 4317 AGTTCAGAGACTTAACCACATGAACCCACGCTCATTCAGAGGTGGAATCAGATTATAAAA 4376 Query 3635 aaaTAGGCCCTATACAATGCACTGTATAAGACCCATAAAAGCCGGTTTCAACGCAACCGG 3694 ||| ||| || | || ||| | || || || ||||||| |||| ||| | | | || Sbjct 4377 AAA-AGGACCGACAC-ATGAATTGCATCAGTCCCATAAGAGCCTCATTCGATAAATCAGG 4434 Query 3695 AGACATAGTCTATTCTAGCaaaaaaaTCAGCAAAGAGCTAGCCT-----CTTTCGCTTTC 3749 |||||| ||| |||| | | ||||| || || | || ||||||||||| Sbjct 4435 AGACATCACTTATAATAGC----AGAGCAGCAGAG-CCTGGTCTACAGCCTTTCGCTTTC 4489 Query 3750 CCATGTCGAAAATGCATCCCTTGCCGACTTAATATGGCAAGAGAAAAAGCAATCCG-GGC 3808 ||| |||||||| | ||||| ||||||| || || |||||||||||||| | || Sbjct 4490 GATTGTAGAAAATGCCTACCTTGTAGACTTAACATAGCTAGAGAAAAAGCAATTAGATGC 4549 Query 3809 TTATCACGAGTCCCAAATG---TGGGACGACAACATATTCCTAACGCTCACTTACGACGA 3865 || || || | ||||| | || ||||||||||||| || | |||||| | || Sbjct 4550 GTA-CATGAAGCAAAAATGAACGGTGATAACAACATATTCCTTACATTAACTTACAATGA 4608 Query 3866 CGA 3868 || Sbjct 4609 GGA 4611 >seq172143 Length=4297 Score = 241 bits (266), Expect = 4e-60 Identities = 523/771 (68%), Gaps = 24/771 (3%) Strand=Plus/Minus Query 841 GCAACCATCAACCAACTAAGACAAGCAATGATGATGCAATCTCTGCTTGAACTCGACGCA 900 |||||||| || || || || |||| | ||| | |||||||| || |||||||| || Sbjct 1433 GCAACCATAAATCAGCTTCGAGAAGCGTTTATGGTACAATCTCTACTAGAACTCGATGCC 1374 Query 901 CGCGGTGGAACACGCTATGTTGAAATTCTTAAATCTCACTTCAACGTCATTAGTCTTGAC 960 || || || || || ||||| || || ||||| | || ||||| || | || | || Sbjct 1373 CGTGGCGGGACTCGGTATGTAGAGATCATTAAAGCACATTTCAATGTAGTAAGCCCAGAT 1314 Query 961 TTCCGCCTACAACGTCCAGAATATCTATCTGGCGGAACTATTGATCTCCAACAGAATCCA 1020 ||| | || ||| | | |||| ||||||||| || |||| || | || ||||| Sbjct 1313 TTCAGACTGCAAAGATCTGAATTTCTATCTGGTGGTACTACAAATGTAGCGCAACATCCA 1254 Query 1021 GTTCCACAAACGTCTTCATCAACAACGG--ACAGC-CCACAAGGTAACCTCGCCGCCTTC 1077 |||| ||||| | | | | ||| ||| | || |||| | || || || || Sbjct 1253 ATTCCCCAAACA-----AGCGA-ATCGGGTACAACTCCGCAAGCGACACTTGCAGCGTTT 1200 Query 1078 TCAACGGCCTCAG-AAT-TCGGAAACAAAATCGGATTCTCAAAATCGTTCGTAGAACACG 1135 || || || || ||| | || ||| ||||| || | ||| || |||||||| | Sbjct 1199 TCGACTGCA--AGCAATATGGGGAACTCTATCGGCTTTACCAAAAGCTTTGTAGAACATG 1142 Query 1136 GATATGTCCTAGGCTTCATCAGAGCCCGTGGACAAGTAACCTACCAACAAGGCCTTCACA 1195 | ||||| |||| | | ||| || | | | || || |||||||| || ||| Sbjct 1141 GCTATGTAATAGGTATGGTACAAGCTCGCGCCGATATTACTTATCAACAAGGACTCAACA 1082 Query 1196 AAATGTGGTCACGTCAAACAAGATGGGACTTCTTCTGGCCTAAATTCCAAGAACTCGGTG 1255 || | ||| | ||| || || | || ||||||||||| ||| | || | ||||| | Sbjct 1081 AACTATGGACTCGTTCCACTAGGTTTGATTTCTTCTGGCCAAAACTTCAGCAGCTCGGAG 1022 Query 1256 AACAAGCTATCCTTAACAAAGAAATCTACGCACAAGGAAATGCTACCGACTCGGAAATCT 1315 | ||||| | | ||||||||||| ||||||||||| | | | ||||| || | | Sbjct 1021 AGCAAGCGGTTTTGAACAAAGAAATATACGCACAAGGCACTAGTGCCGACGATGACGTAT 962 Query 1316 TCGGCTATCAAGAAAGATACGGTGAATACCGCTTCCGTCCATCTGAAATTAAAGGACAAT 1375 | || || |||||||| || | ||||||||||| | || |||||||| | ||| |||| Sbjct 961 TTGGTTACCAAGAAAGGTATGCTGAATACCGCTACAAGCCCTCTGAAATCAGAGGCCAAT 902 Query 1376 TCCGCTCTAACTTCGCTGAAAGCTTAGACGTATGGCACCTTGCCGAATACTT---CACAG 1432 |||| |||| ||||| | |||| |||||||| || || ||| | || | Sbjct 901 TCCGTTCTACATTCGCGCAGTCACTAGATGTATGGCATCTAGCAGAAGAATTTGATTCTT 842 Query 1433 TGAAACCATCACTGAACAAAACTTTCATTGAAAGCAACACACCAATCGAGCGATCTCTCG 1492 || ||| | | ||| ||| || || |||||||| ||||| ||||| | || | | Sbjct 841 TG---CCAGCGTTAAACGGAACATTTATAGAAAGCAATACACCCATCGAAAGGTCAATAG 785 Query 1493 TAGTAACTCGCCCAGATTATCCAGATCTTA-TCGGAGACTTCTGGTTCGACTACACTCAC 1551 ||||||| || |||||||| |||| | |||||| ||||| || |||| ||| Sbjct 784 TAGTAAC---AGAAGGCTATCCAGA-CTTACTGTTAGACTTGTGGTTTGATTACAAACAC 729 Query 1552 GTTAGACCAATGGTCACTTACGGAGTACCAGCTACATTCGGACGCTTCTAA 1602 | ||||| || | || ||||| |||||||| |||| ||||| |||||| Sbjct 728 GCAAGACCTATTATGACCTACGGTGTACCAGCCTCATTAGGACGTTTCTAA 678 Score = 196 bits (216), Expect = 1e-46 Identities = 428/632 (68%), Gaps = 13/632 (2%) Strand=Plus/Minus Query 16 AGACACAACCAACACAGCTTCGCACAGATCCCAAGCGTTCACACAACTCGCTCAAAATTC 75 |||||||| |||||| || ||| || || || | | | | || | |||||||| Sbjct 2231 AGACACAATCAACACTCATTTGCAACTATACCTAGTGCAAATATATCTAGGTCAAAATTT 2172 Query 76 AACCGCTCCTTCGGAACTAAAGACACCTTCAAATTCGATGACCTGACACCAATCTTCATC 135 |||| || |||| | |||||| || || || ||||| | | ||||||| | | Sbjct 2171 GACCGATCATTCGCAGTTAAAGATACTTTTAACTTCGACCAAATCGTACCAATCATGGTA 2112 Query 136 GACGAGATCCTACCCGGTGACACAATCAACATGAACACAAAAACATTCATCCGACTTGCG 195 ||||| | || || ||||| || || ||| | ||| ||| | || ||| | || Sbjct 2111 GACGAAGTACTTCCAGGTGATACGATTAACCTAAACGTGAAATCTTTTGCACGATTAGCA 2052 Query 196 ACTCAAGTAGTCCCTGTTATGGACAGAATGATGCTCGACTTCTATTTCTTCTTCGTCCCT 255 || ||||||||||| | ||||||| ||| | |||| || |||||||| || || Sbjct 2051 ACACAAGTAGTCCCAGCAATGGACAACATGTACTTAGACTACTTCTTCTTCTTTGTGCCA 1992 Query 256 TGCCGACTAGTATGGGACAACTGGGAAAAATTCAACGGAGCACAAGACAACCCATCGGAC 315 |||||||||||| | |||||||| |||||||| || |||||||| ||||| | || Sbjct 1991 AATCGACTAGTATGGAATAACTGGGAGAAATTCAATGGCGCACAAGATGACCCAGCAGAT 1932 Query 316 TCAACGGACTATTTGATCCCAACAATCACAGCAC---CCGCTGGTGGCTTCGAAAACAT- 371 || ||||| ||||| || || || || || || | || | ||||| | | | Sbjct 1931 TCGACGGATTATTTAATTCCGACGATTACTGCCCCTACCACCACCGGCTTTG---CCGTT 1875 Query 372 -GT-CCATCTACGATCACTTCGGAATTCCGACACAAGTTGCAAATCTCGAGATAAATGCT 429 || | ||||| || ||| | || || || || | | ||| | ||||| ||||| Sbjct 1874 GGTACAATCTATGACCACATGGGGATACCCACTGGCATAGAAAACATAGAGATCAATGCC 1815 Query 430 CTACCTTTCAGAGCTTACAATCTTATCTATAACGACTGGTTCCGAGACCAAAATCTTATC 489 | || || ||||| |||||| | |||| ||||| |||||| |||| ||||| |||| Sbjct 1814 TTGCCATTGAGAGCGTACAATTTGATCTGGAACGAATGGTTCAGAGATCAAAA-CTTACA 1756 Query 490 GGA-AAAATCGCCGTTCCTAAAGGAGACGGACCAGACAACCACGCGGACTATCAACTACT 548 ||| ||| | || ||||| || || |||||| | |||||| || Sbjct 1755 GGACTCTATCACTGTAAACAAAGGCGATGGTCCAGACGCTAGTACTGACTAT-GCCTTAA 1697 Query 549 CAAAGC-CGCAAAACCGCACGACTACTTCACAAGCGCACTACCTTGGCCACAAAAAGGCA 607 ||||| |||||| |||||| ||||||||| | |||||||||||||||||||| Sbjct 1696 AAAAGCGTGCAAAAAAGCACGATTACTTCACATCCTGTCTACCTTGGCCACAAAAAGGGC 1637 Query 608 TGGCTGTAGAAATGCCAATCGGCAACTCTGCA 639 || ||||| ||||| | || | |||||| Sbjct 1636 CAGCAGTAGACCTGCCATTAGGTCAGTCTGCA 1605 Score = 168 bits (186), Expect = 2e-38 Identities = 237/330 (72%), Gaps = 2/330 (1%) Strand=Plus/Minus Query 3981 ATGGTCACAGGTGAATATGGAGACAAAACCAAACGCCCTCACTGGCACGTCCTTATCTTC 4040 ||||||||||| |||||||| || | ||| || || || ||||||| ||| |||| Sbjct 2872 ATGGTCACAGGCGAATATGGCGAACTTAACAAGCGGCCACATTGGCACGCACTTCTCTTT 2813 Query 4041 AACTTCCGGCCAGACGACGCAAAAAAGCATTACGTTACAGAACTCGGAGAACAAGTATAT 4100 || | || || | ||||| ||||| | || |||| || | || ||| ||||| Sbjct 2812 AATTATCGCCCTAATGACGCCAAAAAAAAATATATTACTGACCAGGGGGAAGTAGTATTC 2753 Query 4101 ACCTCAGAATTCATCAGAGACCTT-TGGACTCATGGCAATATTGAATTTGGCTCTGTTAC 4159 || |||||| ||| || | || |||| | ||||| ||||||||||| || || Sbjct 2752 ACTTCAGAAAAAATC-GACAAGTTATGGAAAAAAGGCAACGCCGAATTTGGCTCCGTAAC 2694 Query 4160 TCTGGACTCTGCTAGCTACGTTGCGCGTTACGCTGCaaaaaaaCTGGCCCACGGAAACGA 4219 || || ||||| | |||||||| ||||| || |||||||| | | || || || || Sbjct 2693 GCTCGATTCTGCGGGATACGTTGCACGTTATGCCGCAAAAAAGTTAGTTCATGGCAAGGA 2634 Query 4220 CCAAGACCACGACTATCACCCAATTCACAACACTTCaaaaaaaCACGCCATCGGCAAAAA 4279 |||||| || ||| ||||| || || || ||||| |||||| || |||||||||| Sbjct 2633 CCAAGAACATAACTTACACCCTATCCATAAAACTTCTTCAAAACATGCTATCGGCAAAAG 2574 Query 4280 ATGGATTGAAAAATACCACGAACAAACATT 4309 |||||| |||||||| || ||||||| || Sbjct 2573 ATGGATAGAAAAATATTACAAACAAACTTT 2544 >seq172111 Length=4147 Score = 78.8 bits (86), Expect = 3e-11 Identities = 122/172 (71%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 1176 CTACCAACAAGGCCTTCACAAAATGTGGTCACGTCAAACAAGATGGGACTTCTTCTGGCC 1235 |||||||||||| ||| || |||||| | || ||||| | | || | |||||| Sbjct 3641 CTACCAACAAGGTCTTAACCGTATGTGGACTCGCCAAACTCGCTTCGATCATTACTGGCC 3700 Query 1236 -TAAATTCCAAGAACTCGGTGAACAAGCTATCCTTAACAAAGAAATCTACGCACAAGGAA 1294 | || | | | |||||||| ||||||||||||||||| ||||| || ||| || | Sbjct 3701 GTCTTTTGCTA-ACCTCGGTGAGCAAGCTATCCTTAACAAGGAAATTTATCTACAGGGTA 3759 Query 1295 ATGCTACCGACTCGGAAATCTTCGGCTATCAAGAAAGATACGGTGAATACCG 1346 ||| | || || | ||||| |||||||||||||| | ||||| || Sbjct 3760 CCGCTGCTGATGAAGAGGTTTTCGGTTATCAAGAAAGATATGCCGAATATCG 3811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14561290834435