Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_007461.1 Length=4530 Score E Sequences producing significant alignments: (Bits) Value seq59597 156 1e-34 seq6488 141 3e-30 seq160671 138 3e-29 seq172159 123 7e-25 seq172220 82.4 2e-12 >seq59597 Length=4602 Score = 156 bits (172), Expect = 1e-34 Identities = 300/435 (69%), Gaps = 8/435 (2%) Strand=Plus/Plus Query 901 CTTCGTGAAGCTTTCCAATTGCAAAAGCTTTATGAGAGAGATGCCCGTGGTGGAACAAGG 960 || |||||||| ||||| | ||||| | |||| | || || ||| || || || Sbjct 2447 CTGCGTGAAGCGTTCCAGGTACAAAAAATGCTTGAGCGTGACGCTCGTTCAGGTACTCGG 2506 Query 961 TACATTGAGATTATTCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGT 1020 |||| |||||| || | | ||||| |||| || || ||||| ||| | ||||| Sbjct 2507 TACACTGAGATCATCCAAGCTCATTTTGGTGTGACCTCGCCGGATGCCAGGCTTCAACGC 2566 Query 1021 GCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCC 1080 | || || ||||| || ||||| | ||| || || |||| | || ||||| Sbjct 2567 CCTGAATACCTTGGTGGAGGATCAACCCGTGTCAACGTTAATCCGGTGCCTCAGACAAGT 2626 Query 1081 TCAACAGACTCCACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGC--GATTGGAT 1138 || || || | ||| | || ||||| || ||||| |||| |||||| | | || ||| Sbjct 2627 TCTACGGATGCTACAACGCCACAAGGCAACCTTGCGGCTTTTGGTACTGTTGGGTTCGAT 2686 Query 1139 CGAAGCGAGTCTTCACAAAGTCCTTCACAGAACATGGTGTAATCCTTGGATTAGCCTCTG 1198 || | | ||| || || ||||||||||| ||||| || | || | || | | Sbjct 2687 CGT--CATGGCTTTACTAAATCCTTCACAGAGCATGGACATATTATCGGTATTGCTTGCG 2744 Query 1199 TACGCGCCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACG-AAGAACGCGC 1257 | || |||||||| | ||||||||||||| | | | ||||||||||| || | || Sbjct 2745 TTCGGGCCGATCTGACCTATCAGCAAGGTCTCAACCGTATGTGGTCACGTCAGGA-TCGG 2803 Query 1258 TGGGACTTTTACTGGCCTGCTCTTAGC-CATTTAGGTGAGCAAGCTGTGCTCAATAAAGA 1316 | |||||||| |||||||| || || ||||| ||||| ||||| || |||||||| || Sbjct 2804 TACGACTTTTATTGGCCTGC-ATTGGCTCATTTGGGTGAACAAGCGGTACTCAATAAGGA 2862 Query 1317 GATCTATTGCCAAGG 1331 ||| ||| ||||| Sbjct 2863 GATTTATGCACAAGG 2877 >seq6488 Length=2331 Score = 141 bits (156), Expect = 3e-30 Identities = 237/338 (70%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 997 TCTCCAGATGCAAGGTTGCAACGTGCAGAGTATCTTGGAGGTTCTTCAACTCCTGTGAAT 1056 || || ||||| ||| | |||||| | || || ||||| || ||||| | ||| ||| Sbjct 1582 TCACCTGATGCGAGGCTACAACGTCCTGAATACCTTGGTGGAGGATCAACCCGTGTCAAT 1523 Query 1057 ATTTCTCCGATTCCACAGACTTCCTCAACAGACTCCACATCTCCTCAAGGAAATCTTGCT 1116 |||| || |||| || ||||| || ||||| | || |||| || || ||||||||| Sbjct 1522 GTTTCGCCTGTTCCTCAAACTTCTTCTACAGATGCGACCACTCCCCAGGGCAATCTTGCT 1463 Query 1117 GCTTATGGTACAG--CGATTGGATCGAAGCGAGTCTTCACAAAGTCCTTCACAGAACATG 1174 |||| ||||| | | || ||||| | | || || ||||| ||||| ||||| | Sbjct 1462 GCTTTCGGTACTGTCGGTTTCGATCG--CCATGGTTTTACTAAGTCTTTCACCGAACACG 1405 Query 1175 GTGTAATCCTTGGATTAGCCTCTGTACGCGCCGATCTCAACTATCAGCAAGGTTTGGATA 1234 || ||| ||||| | || | ||| | |||||| | | |||||||||||| || | Sbjct 1404 GTCACATCATTGGAATTGCGTGTGTTAGAGCCGATATTACCTATCAGCAAGGACTGAACC 1345 Query 1235 GGATGTGGTCACG-AAGAACGCGCTGGGACTTTTACTGGCCTGCTCTTAGCCATTTAGGT 1293 | |||||||| || || || || | || ||||| |||||||| ||| || | || Sbjct 1344 GCATGTGGTCTCGCCAGGAC-CGGTATGATTTTTATTGGCCTGCACTTGCTCACCTGGGC 1286 Query 1294 GAGCAAGCTGTGCTCAATAAAGAGATCTATTGCCAAGG 1331 || ||||| || || ||||| || || ||| ||||| Sbjct 1285 GAACAAGCCGTACTGAATAAGGAAATTTATGCACAAGG 1248 >seq160671 Length=4645 Score = 138 bits (152), Expect = 3e-29 Identities = 487/762 (64%), Gaps = 38/762 (5%) Strand=Plus/Minus Query 908 AAGCTTTCCAATTGCAAAAGCTTTATGAGAGAGATGCCCGTGGTGGAACAAGGTACATTG 967 ||||||| ||| | || || | | || | |||||| | || || || || || | | Sbjct 3122 AAGCTTTTCAAGTACAGAAATTATTGGAAAAAGATGCTAGAGGCGGTACTAGATATACAG 3063 Query 968 AGATTATTCGTTCCCATTTCAATGTGCAGTCTCCAGATGCAAGGTTGCAACGTGCAGAGT 1027 | |||||| | ||||| ||| || |||||| | | | ||| | |||||| Sbjct 3062 AAATTATTAGAGGTCATTTTGGTGTAACTTCACCAGATCAACGACTTCAAAGACCAGAGT 3003 Query 1028 ATCT---TGGAGGTTCTTCAACTCCTGTGAATATTTCTCCGATTCCACAGACTTCCTCAA 1084 || | |||||| ||||| | | || ||||| || | ||||||| || |||| Sbjct 3002 ATTTAGGTGGAGGCTCTTCC---CAAATTAACATTTCACCCGTAGCACAGACGTCGTCAA 2946 Query 1085 CAGACTCCACATCTCCTCAAGGAAATCTTGCTGCTTATGGTACAGCGATTGGATCGAAGC 1144 ||||| | ||| | |||||||||||| | | |||| |||||| | |||| Sbjct 2945 CAGACGCAACAACACCTCAAGGAAATTTATCAGCTTTTGGTACTACAGGTGGAAGACTTG 2886 Query 1145 GAGTCTTCACAAAGTCCTTCACAGAACATGGTGTAATCCTTGGATTAGCCTCTGTACGCG 1204 | | ||||| ||| || ||||||||| |||| | | ||| |||| | ||| | | Sbjct 2885 GTGGATTCACTAAGAGTTTTACAGAACATTGTGTTTTATTAGGACTAGCATGTGTGAGAG 2826 Query 1205 CCGATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGGGACT 1264 | ||||| | ||||| ||||||| || | | ||||||||| ||| || | || | Sbjct 2825 CTGATCTTACTTATCAAGAAGGTTTAGACCGCAAATGGTCACGACAAACACGGTACGATT 2766 Query 1265 TTTACTGGCCTGCTCTTAGC-CATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGATCTAT 1323 |||| ||||| | ||||| ||| | || || |||||||| | || |||||||| || Sbjct 2765 TTTATTGGCCATC-ATTAGCTCATATTGGCGAACAAGCTGTATTAAACAAAGAGATTTA- 2708 Query 1324 TGCCAAGGTCCTGCAGTTAAGGATGCTCAGAATGGCAATGTTGTTGTGGATGAGCAAGTC 1383 ||||| | ||| | |||| | ||||| | || Sbjct 2707 -----------TGCAG--ATGGAAGTTCAGCA----------------GATGAAGATGTT 2677 Query 1384 TTTGGATATCAGGAGAGATTTGCGGAGTATCGCTATAAGACTTCGAAAATTACTGGCAAG 1443 ||||| |||||||| |||| || || ||| | ||| |||| |||||||| || | Sbjct 2676 TTTGGTTATCAGGAAAGATATGGAGAATATAGATATTTTCCTTCAAAAATTACAGGATTG 2617 Query 1444 TTCCGATCAAATGCTACAAGTTCTTTAGATTCATGGCATTTAGCTCAGGAATTTGAGAAT 1503 || || ||||| || || | |||| |||||| | |||| ||||||| Sbjct 2616 TTTAGAAGCAATGCAACTGCATCACTTGATTATTGGCATCTTTCTCAAGAATTTGGTTCG 2557 Query 1504 CTTCCAACACTTTCTCCGGAGTTTATCGAAGAAAATCCTCCTATGGATCGTGTTCTTGCT 1563 | ||||||||| | || || |||||||||| ||| | || | || |||| Sbjct 2556 TTACCAACACTTAATGATTCTTTCATACAAGAAAATCCACCTGTAAATAGAGTAATTGCA 2497 Query 1564 GTAAATACTGAGCCAGATTTTCTTTTAGATGGCTGGTTTTCATTGCGTTGTGCAAGACCA 1623 | | ||||||| | || || || ||| | | ||| || |||||| Sbjct 2496 ACACCTGATGAGCCACACTTGCTGTTTGATTCATATATAGAATTAATAACAGCCAGACCA 2437 Query 1624 ATGCCTGTCTACTCTGTTCCAGGCCTCATTGATCATTTCTAA 1665 ||||| || || ||||||||||| || || |||||||||||| Sbjct 2436 ATGCCAGTTTATTCTGTTCCAGGTCTAATCGATCATTTCTAA 2395 >seq172159 Length=4363 Score = 123 bits (136), Expect = 7e-25 Identities = 265/396 (67%), Gaps = 9/396 (2%) Strand=Plus/Plus Query 1056 TATTTCTCCGATTCCACAGACTTCCTCAACAGACTCCACATCTCCTCAAGGAAATCTTGC 1115 |||||| || ||| | || || || || || || || ||| | || ||||| || || || Sbjct 3834 TATTTCCCCTATTGCTCAAACATCATCCACCGATTCTACAACCCCACAAGGTAACCTAGC 3893 Query 1116 TGCTTATGGTACAGCGATTGGATCGAAGCGAGTCTTCACAAAGTCCTTCACAGAACATGG 1175 |||| ||||| | | || || | | |||||||| ||||| || || ||| | Sbjct 3894 TGCTATGGGTACCGTTACTGTTTCTGGACATGGATTCACAAAATCCTTTACGGAGCATTG 3953 Query 1176 TGTAATCCTTGGATTAGCCTCTGTACGCGCCGATCTCAACTATCAGCAAGGTTTGGATAG 1235 ||| ||||| ||| | | ||| || || || | | ||| || ||||| || | || Sbjct 3954 TGTTATCCTGGGAATGGTAAATGTTCGTGCAGACATTACCTACCAACAAGGCTTAAACAG 4013 Query 1236 GATGTGGTCACGAAGAACGCGCTGGGACTTTTACTGGCCTGCTCTTAGCCATTTAGGTGA 1295 |||| || |||| | ||||||| ||| |||||| ||||| ||| ||||||| Sbjct 4014 AATGTTTAGCCGGCGAACTAGGTGGGACTATTATTGGCCTTCTCTTGCCCACCTAGGTGA 4073 Query 1296 GCAAGCTGTGCTCAATAAAGAGATCTATTGCCAAGGTCCTGCAGTTAAGGATGCTCAGAA 1355 |||||| | ||||| || || || ||| |||| | ||| |||| | | Sbjct 4074 GCAAGCAATCCTCAACAAGGAAATATATGCACAAG-----GAAGT----GATGTACTCGA 4124 Query 1356 TGGCAATGTTGTTGTGGATGAGCAAGTCTTTGGATATCAGGAGAGATTTGCGGAGTATCG 1415 || | || | |||| ||||| || |||||||| || ||||||||||| || || || Sbjct 4125 TGACGGTGATATTGTTGATGACATGGTATTTGGATACCAAGAGAGATTTGCTGAATACCG 4184 Query 1416 CTATAAGACTTCGAAAATTACTGGCAAGTTCCGATC 1451 |||||| | || | || || || || || |||| Sbjct 4185 TTATAAGCCATCAATTATCACAGGTAAATTTAGATC 4220 >seq172220 Length=4696 Score = 82.4 bits (90), Expect = 2e-12 Identities = 125/177 (71%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 1150 TTCACAAAGTCCTTCACAGAACATGG---TGTAATCCTTGGATTAGCCTCTGTACGCGCC 1206 ||||| |||||||| ||||||||||| ||| ||| ||| | || | || |||| Sbjct 1861 TTCACTAAGTCCTTTACAGAACATGGTTATGTTATC---GGACTTGCATGTGCTCGCGGA 1917 Query 1207 GATCTCAACTATCAGCAAGGTTTGGATAGGATGTGGTCACGAAGAACGCGCTGGGACTTT 1266 ||| | | ||||| ||||| || |||| ||||||||||| ||| || |||||||| Sbjct 1918 GATATTACTTATCAACAAGGCTTAAATAGAATGTGGTCACGTCAAACCCGATGGGACTTC 1977 Query 1267 TACTGGCCTGCTCTTAGCCATTTAGGTGAGCAAGCTGTGCTCAATAAAGAGATCTAT 1323 | ||||||| ||| | | || || |||| | | |||||||| |||||| Sbjct 1978 TTCTGGCCTAAACTTCAAGAACTCGGAGAACAAGAAATCTTAAATAAAGAAATCTAT 2034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14356877012675