Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq69920 127 7e-26 seq90441 78.8 3e-11 >seq69920 Length=5751 Score = 127 bits (140), Expect = 7e-26 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 2579 CCTAACGACCTTTCTCACCTCGTCTTCGAGGCTGGTAAAATCGGCCGTTTAAAAACTATC 2638 ||| | |||||||| || || ||||| || ||||||||||| || || | ||||| | Sbjct 3757 CCTCATGACCTTTCACATCTTGTCTTTGATGCTGGTAAAATTGGACGCCTTCAAACTCTT 3816 Query 2639 TCCTGGACTCCAGTTGTCGCTGGCGACTCATTTGAAACTGAGATGGTAGGCGCTATTCGC 2698 || | ||| ||| | ||||| |||||||| ||| | | | ||| | |||| Sbjct 3817 TCAGCTATTCCGGTTATTGCTGGTGACTCATTCGAACAAAACTTAATTGGCTCACTTCGT 3876 Query 2699 CTTTCTCCACTCCGTCGCGGCCTTGCCGTCGACTCTCGCGTGGATATCTTCTCTTTCTAT 2758 || ||||| || |||||| || || || || |||| || ||| | |||||||||||| Sbjct 3877 CTATCTCCGCTTATTCGCGGTCTGGCTGTTGATTCTCAAGTAGATGTATTCTCTTTCTAT 3936 Query 2759 ATTCCGCATCGTCATATCTATGGTCAAGAATTCATTGAATTCATGAAA 2806 |||| ||||||||||| || ||| | |||| ||||||| |||||| Sbjct 3937 GTTCCTCATCGTCATATTTACGGTGACGAATGGGTTGAATTTATGAAA 3984 Score = 107 bits (118), Expect = 7e-20 Identities = 250/373 (67%), Gaps = 17/373 (5%) Strand=Plus/Plus Query 3164 CAAGAACGTGACTACTTCATGACTCGCTATCGCGATAT---TATGAAAGACTTCGGAGGT 3220 |||||| | || ||||||||| || ||||| ||| | || | ||| |||||| || Sbjct 4360 CAAGAAAGAGAATACTTCATGCAGCGTTATCGTGATGTGGTTAAGCAAGGCTTCGGCGG- 4418 Query 3221 CACACCTCCTAT-GACGGTGATAACCGTCCTCTGCTGCTTATGCGCTCTGAATTTTGGGC 3279 | | || |||| || | ||| | ||||||| || |||| || || |||||||| Sbjct 4419 CTCTACTTCTATCGATGTCGATGAGCGTCCTCGCCTACTTAATCGTACTACGTTTTGGGC 4478 Query 3280 CTCTGGCTATGACGTCGACGGTACTGACCAATCCTCTTTAGGTCAGTTCTCCGGTCGCGT 3339 ||||| ||||| || | ||||||||||| | || | || || | | ||||| || Sbjct 4479 TTCTGGTTATGATGTTAATGGTACTGACCAGGCGTCACTTGGGCAATATACTGGTCGTGT 4538 Query 3340 CCAACAAACATTCAATCACAAAGTACCTCGCTTCTATGTACCTGAACACGGCGTCATTAT 3399 |||||| | || | ||| ||| || ||||||| ||| |||||||| || || || Sbjct 4539 TCAACAATCGTTTACTCATAAAACTCCGCGCTTCTTTGTTCCTGAACATGGTGTTATCTG 4598 Query 3400 GACT---CTCGCCGTTACTCGCTTCCCTCCTACTCATGAAATGGAGATGCACTATCTTGT 3456 |||| || | ||| || |||||| ||| || || || | |||||||| Sbjct 4599 GACTATGCTTGTCGT---GCGTTTCCCTGTTACGCACCAATCAGAAAATCACTATCTCTA 4655 Query 3457 CGGTAAAG------AATCTTTAACCTATACCGACCTCGCCTGCGACCCTGCTCTTATGGC 3510 | || ||| ||||| | || ||| | ||||| | ||||||||||| | | | Sbjct 4656 CAGTGAAGCTGGTAAATCTCTTACTTATGCTGACCTTTCAGGCGACCCTGCTATCACATC 4715 Query 3511 TAACCTGCCTCCG 3523 |||| |||||| Sbjct 4716 TAACAGCCCTCCG 4728 >seq90441 Length=2660 Score = 78.8 bits (86), Expect = 3e-11 Identities = 133/190 (70%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 2049 GACCTGACCGAAGACGACTTCGA-TTTCTTAACCCGTGACCGTGTATGGATTGCCACTGA 2107 ||||| || |||| || ||||| ||||||| | | || |||||| |||| | | Sbjct 334 GACCTTACTCAAGATGATTTCGAGTTTCTTACGCAATCACAA-GTATGGGTTGCTTCGCA 276 Query 2108 CCGCTCCCGTGCTCGCCGCGCTATTGAGGCCTGCGTATATGGTACATTGGACTTTGTCGG 2167 || || || | ||| || || ||| | || |||||||| | | ||| | ||||| Sbjct 275 ACGTTCTCGCGTTCGTCGTTGCATCGAGTCTTGTGTATATGGATCTCTTGACATGGTCGG 216 Query 2168 ATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCA 2227 | |||||||||||||||| | ||||||||| |||| || || |||| || ||||| Sbjct 215 AGTGGCTCGCTTTCCTGCTCCAGCTGAGTTTATAGCTGGTGTAATCGCTTTCTACGTTCA 156 Query 2228 TCCCGTTAAC 2237 || || ||| Sbjct 155 CCCTGTCAAC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17410308475215