Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq69920 131 6e-27 seq90441 86.0 2e-13 >seq69920 Length=5751 Score = 131 bits (144), Expect = 6e-27 Identities = 171/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 3116 CGTATTCCTCACGACCTTTCTCATCTGGTTTTTGATGCAGGCAAAATTGGTCG--TTTAA 3173 |||| ||||| |||||||| ||||| || |||||||| || |||||||| || || || Sbjct 3751 CGTACACCTCATGACCTTTCACATCTTGTCTTTGATGCTGGTAAAATTGGACGCCTTCAA 3810 Query 3174 AGGTTGTTTCTTGGACTCCTGTTGTTGCAGGTGATTCTTTTGAGCTTGATATGATTGGCG 3233 | | |||| | ||| ||| |||| ||||| || || || | | | |||||| Sbjct 3811 AC--TCTTTCAGCTATTCCGGTTATTGCTGGTGACTCATTCGAACAAAACTTAATTGGCT 3868 Query 3234 CTATTCGCCTTTCCCCGCTTCGTCGTGGCCTTGCTGTTGACTCTCGTGTTGACCTGTTCA 3293 | |||| || || |||||| ||| || || |||||||| |||| || || | ||| Sbjct 3869 CACTTCGTCTATCTCCGCTTATTCGCGGTCTGGCTGTTGATTCTCAAGTAGATGTATTCT 3928 Query 3294 CGTTTTATGTCCCTCATCGTCATGTATATGGTGAGCAGTGGATTGATTTTATGAA 3348 | || ||||| |||||||||||| | || ||||| | ||| |||| |||||||| Sbjct 3929 CTTTCTATGTTCCTCATCGTCATATTTACGGTGACGAATGGGTTGAATTTATGAA 3983 Score = 91.5 bits (100), Expect = 6e-15 Identities = 164/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 3698 CATACTGAGCAGGAGCGTGATTACTTCATGACTCGTTATCGTGATATTGTTAACGAA--- 3754 ||||||||||| || | || ||||||||| |||||||||||| | ||||| || Sbjct 4351 CATACTGAGCAAGAAAGAGAATACTTCATGCAGCGTTATCGTGATGTGGTTAAGCAAGGC 4410 Query 3755 TTTGGAGGTAGTACTTCTTATGATGCGGATAATCGTCCTTTGCTTGTTATGCATTCTGAG 3814 || || || ||||||| |||| ||| | |||||| || ||| | | || | Sbjct 4411 TTCGGCGGCTCTACTTCTATCGATGTCGATGAGCGTCCTCGCCTACTTAATCGTACTACG 4470 Query 3815 TTCTGGGCCTCAGGCTATGATGTTGACGGCACCGACCAAAGCTCTCTCGGTCAGTTCTCC 3874 || ||||| || || ||||||||| | || || ||||| || || || || | | Sbjct 4471 TTTTGGGCTTCTGGTTATGATGTTAATGGTACTGACCAGGCGTCACTTGGGCAATATACT 4530 Query 3875 GGTCGTGTCCAGCAGACGTTTAAGCATTCAGTACCGCGATTCTTCTGCCCTGAGCATGG 3933 |||||||| || || |||||| ||| | ||||| ||||| ||||| ||||| Sbjct 4531 GGTCGTGTTCAACAATCGTTTACTCATAAAACTCCGCGCTTCTTTGTTCCTGAACATGG 4589 >seq90441 Length=2660 Score = 86.0 bits (94), Expect = 2e-13 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 2673 CGTCGCTGTGTTGAGGCTTGTGTTTATGGAACACTGGACTTTGTGGGATACCCTCGCTTT 2732 ||||| || | ||| ||||||| |||||| | || ||| | || ||| |||||||| Sbjct 262 CGTCGTTGCATCGAGTCTTGTGTATATGGATCTCTTGACATGGTCGGAGTGGCTCGCTTT 203 Query 2733 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAAC 2789 |||||||| | ||||||||| |||| || || |||| || ||||| || |||||| Sbjct 202 CCTGCTCCAGCTGAGTTTATAGCTGGTGTAATCGCTTTCTACGTTCACCCTGTCAAC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19264962778048