Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq69920 154 5e-34 seq90441 86.0 2e-13 >seq69920 Length=5751 Score = 154 bits (170), Expect = 5e-34 Identities = 277/400 (69%), Gaps = 11/400 (3%) Strand=Plus/Plus Query 3153 TATGCTAAACTCCACACTGAACAGGAACGTGACTATTTCATGACTCGCTACCGCGATAT- 3211 || |||| ||||| ||||| || ||| | || || |||||| || || || ||| | Sbjct 4339 TACGCTATGCTCCATACTGAGCAAGAAAGAGAATACTTCATGCAGCGTTATCGTGATGTG 4398 Query 3212 --TATGAAAGACTTTGGCGGTCACACCTCCTA-CGACGGTGATAACCGTCCTCTGCTCCT 3268 || | ||| ||| ||||| | | || ||| ||| | ||| | ||||||| || || Sbjct 4399 GTTAAGCAAGGCTTCGGCGG-CTCTACTTCTATCGATGTCGATGAGCGTCCTCGCCTACT 4457 Query 3269 GATGCGCTCTGAATTTTGGGCCTCTGGCTATGACGTCGACGGTACTGACCAAACTTCATT 3328 | || || |||||||| ||||| ||||| || | ||||||||||| | ||| | Sbjct 4458 TAATCGTACTACGTTTTGGGCTTCTGGTTATGATGTTAATGGTACTGACCAGGCGTCACT 4517 Query 3329 GGGTCAGTTCTCTGGTCGCGTCCAACAAACCTTTAATCATAAAGTGCCTCGCTTCTATGT 3388 || || | ||||||| || |||||| | |||| ||||||| || ||||||| ||| Sbjct 4518 TGGGCAATATACTGGTCGTGTTCAACAATCGTTTACTCATAAAACTCCGCGCTTCTTTGT 4577 Query 3389 TCCTGAGCATGGCGTAATTATGACTTTATCTGTTACTCGCTTCCCTCCTACTCACGAAAT 3448 |||||| ||||| || || |||| | ||| || |||||| ||| ||| || Sbjct 4578 TCCTGAACATGGTGTTATCTGGACTATGCTTGTCGTGCGTTTCCCTGTTACGCACCAATC 4637 Query 3449 GGAAATGCACTATCTCGTCGGT-AAG-----GAATCTCTGACTTATACTGACATTGCCTG 3502 |||| ||||||||| | || ||| ||||||| |||||| ||||| || | | Sbjct 4638 AGAAAATCACTATCTCTACAGTGAAGCTGGTAAATCTCTTACTTATGCTGACCTTTCAGG 4697 Query 3503 TGACCCTGCTCTTATGGCTAACCTGCCTCCGCGTGAAATT 3542 ||||||||| | | ||||| |||||| ||||||| Sbjct 4698 CGACCCTGCTATCACATCTAACAGCCCTCCGGCTGAAATT 4737 Score = 150 bits (166), Expect = 6e-33 Identities = 176/237 (74%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 2583 CGTATTCCGCATGACCTCTCACATCTGGTATTCGAAGCTGGTAAAATCGGACGCCTTAAA 2642 |||| || |||||||| |||||||| || || || ||||||||||| ||||||||| || Sbjct 3751 CGTACACCTCATGACCTTTCACATCTTGTCTTTGATGCTGGTAAAATTGGACGCCTTCAA 3810 Query 2643 ACTATCTCCTGGACTCCTGTTGTCGCTGGTG----ATTCTTACGAAACTGAAATGGTAGG 2698 ||| | || | ||| ||| | ||||||| |||| || ||||| || | || Sbjct 3811 ACTCTTTCAGCTATTCCGGTTATTGCTGGTGACTCATTCGAACAAAACTTAA----TTGG 3866 Query 2699 CGCTATTCGTCTTTCTCCTCTCCGTCGTGGTCTGGCTGTCGACTCTCGCGTCGACGTCTT 2758 | | ||||||| ||||| || ||| ||||||||||| || |||| || || || || Sbjct 3867 CTCACTTCGTCTATCTCCGCTTATTCGCGGTCTGGCTGTTGATTCTCAAGTAGATGTATT 3926 Query 2759 TACTTTCTATATCCCTCATCGTCATGTCTATGGTCAACAATGGATTGACTTTATGAA 2815 |||||||| | |||||||||||| | || ||| | ||||| |||| |||||||| Sbjct 3927 CTCTTTCTATGTTCCTCATCGTCATATTTACGGTGACGAATGGGTTGAATTTATGAA 3983 >seq90441 Length=2660 Score = 86.0 bits (94), Expect = 2e-13 Identities = 154/224 (69%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 2058 TTGACCTGACTGAGGACGATTTCGAATTCTTAACTCGTGACCGTGTATGGATTGCAACTG 2117 ||||||| ||| | || |||||||| || | || | | |||||| |||| | Sbjct 336 TTGACCTTACTCAAGATGATTTCGAGTTTCTTACGCAATCACAAGTATGGGTTGCTTCGC 277 Query 2118 ACCGCTCCCGTGCTCGCCGCGCTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTGTGG 2177 | || || || | ||| || || ||| |||| || |||||| |||| ||| | || | Sbjct 276 AACGTTCTCGCGTTCGTCGTTGCATCGAGTCTTGTGTATATGGATCTCTTGACATGGTCG 217 Query 2178 GATACCCTCGCTTTCCTGCTCCTATTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTC 2237 || |||||||||||||||| ||||||||| |||| || || |||| || |||| Sbjct 216 GAGTGGCTCGCTTTCCTGCTCCAGCTGAGTTTATAGCTGGTGTAATCGCTTTCTACGTTC 157 Query 2238 ATCCCGTTAACATTCAAACG---GCATGTCTTATTATGGAAGGC 2278 | || || ||| |||| | || ||| || ||||||||| Sbjct 156 ACCCTGTCAAC---CAAATGGTTGCCTGTTCAATGATGGAAGGC 116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17410308475215