Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_012868.1 Length=6094 Score E Sequences producing significant alignments: (Bits) Value seq69920 122 3e-24 seq90441 86.0 2e-13 >seq69920 Length=5751 Score = 122 bits (134), Expect = 3e-24 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 3104 TGACCTTTCTCATCTTGCCTTTGACTGTGGCATGATTGGTCGTTTGAAAACTGTTTCATG 3163 ||||||||| ||||||| |||||| ||| | ||||| || | ||||| ||||| Sbjct 3762 TGACCTTTCACATCTTGTCTTTGATGCTGGTAAAATTGGACGCCTTCAAACTCTTTCAGC 3821 Query 3164 GACTCCTGTTATTGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGCGCTTTGCGTCTTTC 3223 | ||| ||||||||||| || || || || | | ||||| | | ||||| || Sbjct 3822 TATTCCGGTTATTGCTGGTGACTCATTCGAACAAAACTTAATTGGCTCACTTCGTCTATC 3881 Query 3224 TCCTCTGCGTCGTGGTTTAGCTATTGACTCTAAGGTTGATTTTTTCACTTTCTATATTCC 3283 ||| || ||| ||| | ||| |||| ||| | || ||| | ||| |||||||| |||| Sbjct 3882 TCCGCTTATTCGCGGTCTGGCTGTTGATTCTCAAGTAGATGTATTCTCTTTCTATGTTCC 3941 Query 3284 GCATCGCCATGTTTATGGTGACCAGTGGATTCAATTTATG 3323 ||||| ||| |||| |||||| | ||| || |||||||| Sbjct 3942 TCATCGTCATATTTACGGTGACGAATGGGTTGAATTTATG 3981 Score = 95.1 bits (104), Expect = 5e-16 Identities = 189/277 (68%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 3671 GCTTCATACTGAGCAGGAGCGTACTTATTTCATGCAGCGTTATCGTGAT---GTTATCTC 3727 ||| ||||||||||| || | || ||||||||||||||||||||| |||| Sbjct 4347 GCTCCATACTGAGCAAGAAAGAGAATACTTCATGCAGCGTTATCGTGATGTGGTTAAGCA 4406 Query 3728 CAGCTTTGGCGGTTCAACCTCCTAT-GATGCCGATAACCGACCGTTGCTTGTTATGCACA 3786 |||| ||||| || | || |||| |||| |||| | || || || ||| | | Sbjct 4407 AGGCTTCGGCGGCTCTA-CTTCTATCGATGTCGATGAGCGTCCTCGCCTACTTAATCGTA 4465 Query 3787 CCGATTTCTGGGCTTCCGGTTACGACGTTGACGGTACCGACCAATCTTCCCTCGGACAGT 3846 | || |||||||| ||||| || ||| | ||||| ||||| | || || || || | Sbjct 4466 CTACGTTTTGGGCTTCTGGTTATGATGTTAATGGTACTGACCAGGCGTCACTTGGGCAAT 4525 Query 3847 TTTCGGGTCGAGTCCAACAGACGTTTAAACACTCAGTGCCTCGATTCTTCGTGCCGGAGC 3906 | | ||||| || ||||| |||||| || | || || ||||| || || || | Sbjct 4526 ATACTGGTCGTGTTCAACAATCGTTTACTCATAAAACTCCGCGCTTCTTTGTTCCTGAAC 4585 Query 3907 ATGGTGTCATGATGACTTTGATGCTGGTTCGCTTCCC 3943 ||||||| || |||| || | | || || ||||| Sbjct 4586 ATGGTGTTATCTGGACTATGCTTGTCGTGCGTTTCCC 4622 >seq90441 Length=2660 Score = 86.0 bits (94), Expect = 2e-13 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 2649 CGTCGCTGTGTGGAGGCTTGTGTTTATGGAGCGCTGGACTTTGTCGGCTATCCTCGCTTT 2708 ||||| || | ||| ||||||| |||||| | || ||| | ||||| |||||||| Sbjct 262 CGTCGTTGCATCGAGTCTTGTGTATATGGATCTCTTGACATGGTCGGAGTGGCTCGCTTT 203 Query 2709 CCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAAC 2765 |||||||| | ||||||||| |||| || || |||| || ||||| || |||||| Sbjct 202 CCTGCTCCAGCTGAGTTTATAGCTGGTGTAATCGCTTTCTACGTTCACCCTGTCAAC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19348001410712