Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_022790.1 Length=4129 Score E Sequences producing significant alignments: (Bits) Value seq160671 188 2e-44 seq172159 89.7 1e-14 seq172143 80.6 7e-12 >seq160671 Length=4645 Score = 188 bits (208), Expect = 2e-44 Identities = 370/543 (68%), Gaps = 22/543 (4%) Strand=Plus/Minus Query 839 TATATGCAGATCTATCTGAAGCTACATCAGCAACTATTAATCAACTTCGATTAGCATTTG 898 ||||||||||||| ||| || | | || ||| |||||||||| ||| ||| ||| Sbjct 3173 TATATGCAGATCTTTCTAGTGCAGTAGCCGCCACTGTTAATCAACTCCGACAAGCTTTTC 3114 Query 899 CAACACAAAAATTTCTTGAAATACAAGCTCGAGGCGGTTCAAGATATATCGAAGTAATAA 958 | ||| ||||| | |||| | | ||| |||||||| | ||||||| ||| | || | Sbjct 3113 AAGTACAGAAATTATTGGAAAAAGATGCTAGAGGCGGTACTAGATATACAGAAATTATTA 3054 Query 959 AAAATCATTTTAACGTAACTAGCCCAGATGCTAGATTACAACGACCAGAATATCTTGGTG 1018 | ||||||| |||||| |||||| || | ||| ||||||| ||| | ||| Sbjct 3053 GAGGTCATTTTGGTGTAACTTCACCAGATCAACGACTTCAAAGACCAGAGTATTTAGGT- 2995 Query 1019 GCGGAAGCTCACCGGTAAATATCAGT---CCGGTCGCACAAACATCGTCAACTGATGCAA 1075 ||| |||| | || || || | || || ||||| || |||||||| || |||| Sbjct 2994 --GGAGGCTCTTCCCAAATTAACATTTCACCCGTAGCACAGACGTCGTCAACAGACGCAA 2937 Query 1076 CAACACCGCAAGGTAACTTATCGGCCATAGGTACAAC-GGT-----ACTTAGTGGCCACT 1129 ||||||| ||||| || ||||| || | ||||| || ||| |||| |||| Sbjct 2936 CAACACCTCAAGGAAATTTATCAGCTTTTGGTACTACAGGTGGAAGACTTGGTGG----- 2882 Query 1130 CTTTTACAAAGAGTTTCACTGAACATACAATAGTAATAGGTATGGTATCTGTAAGAACAG 1189 || || |||||||| || |||||| | || |||| | | || ||| ||| | | Sbjct 2881 -ATTCACTAAGAGTTTTACAGAACATTGTGTTTTATTAGGACTAGCATGTGTGAGAGCTG 2823 Query 1190 ATTTAACATACCAACAAGGACTGAACAG--AATGTTTAGTAGAGAAACAATATACGATTA 1247 || | || || ||| |||| | || | |||| | | || ||||| ||||||| Sbjct 2822 ATCTTACTTATCAAGAAGGTTTAGACCGCAAATGGTCA--CGACAAACACGGTACGATTT 2765 Query 1248 CTACTGGCCAACCCTTTCAACGATTGGCGAACAAGCAGTCAAAAACAAAGAAATATACGC 1307 || |||||| | | | |||||||||||||| || ||||||||| || || || Sbjct 2764 TTATTGGCCATCATTAGCTCATATTGGCGAACAAGCTGTATTAAACAAAGAGATTTATGC 2705 Query 1308 ACAAGGAAGTGCAGCCGACGAAACTACGTTCGGCTATCAAGAGCGTTATGCGGAATATAG 1367 | | |||||| |||| || ||| | || || ||||| || | |||| |||||||| Sbjct 2704 AGATGGAAGTTCAGCAGATGAAGATGTTTTTGGTTATCAGGAAAGATATGGAGAATATAG 2645 Query 1368 ATA 1370 ||| Sbjct 2644 ATA 2642 >seq172159 Length=4363 Score = 89.7 bits (98), Expect = 1e-14 Identities = 183/270 (68%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 1051 GCACAAACATCGTCAACTGATGCAACAACACCGCAAGGTAACTTATCGGCCATAGGTACA 1110 || |||||||| || || ||| | ||||| || ||||||||| || | || || ||||| Sbjct 3847 GCTCAAACATCATCCACCGATTCTACAACCCCACAAGGTAACCTAGCTGCTATGGGTAC- 3905 Query 1111 ACGGTACT--TAGTGGCCACTCTTTTACAAAGAGTTTCACTGAACATACAATAGTAATAG 1168 || |||| | ||| || || ||||| || || || ||| | | | | Sbjct 3906 -CGTTACTGTTTCTGGACATGGATTCACAAAATCCTTTACGGAGCATTGTGTTATCCTGG 3964 Query 1169 GTATGGTATCTGTAAGAACAGATTTAACATACCAACAAGGACTGAACAGAATGTTTAGTA 1228 | |||||| ||| | |||| | || ||||||||||| | |||||||||||||| Sbjct 3965 GAATGGTAAATGTTCGTGCAGACATTACCTACCAACAAGGCTTAAACAGAATGTTTAGCC 4024 Query 1229 GAGAAACAATATACGATTACTACTGGCCAACCCTTTCAACGATTGGCGAACAAGCAGTCA 1288 | ||| | | || || || ||||| | ||| | | || || |||||| || Sbjct 4025 GGCGAACTAGGTGGGACTATTATTGGCCTTCTCTTGCCCACCTAGGTGAGCAAGCAATCC 4084 Query 1289 AAAACAAAGAAATATACGCACAAGGAAGTG 1318 ||||| |||||||| ||||||||||||| Sbjct 4085 TCAACAAGGAAATATATGCACAAGGAAGTG 4114 >seq172143 Length=4297 Score = 80.6 bits (88), Expect = 7e-12 Identities = 170/248 (69%), Gaps = 12/248 (5%) Strand=Plus/Minus Query 1162 GTAATAGGTATGGTATCTGTAAGAACAGATTTAACATACCAACAAGGACTGAACAGAATG 1221 ||||||||||||||| | | | ||| | || || ||||||||||| |||| | | Sbjct 1136 GTAATAGGTATGGTACAAGCTCGCGCCGATATTACTTATCAACAAGGACTCAACAAACTA 1077 Query 1222 TTTAGTAGAGAAACAATATACGATTACTACTGGCCAACCCTTTCAAC-GATTGGCGAACA 1280 | | | | || | | |||| || |||||||| ||| || | | | || || || Sbjct 1076 TGGACTCGTTCCACTAGGTTTGATTTCTTCTGGCCAAAACTT-CAGCAGCTCGGAGAGCA 1018 Query 1281 AGCAGTCAAAAACAAAGAAATATACGCACAAGGAAGTGCAGCCGACGA--AACTACGTTC 1338 ||| || ||||||||||||||||||||||| | | |||||||| | || || Sbjct 1017 AGCGGTTTTGAACAAAGAAATATACGCACAAGGCACTAGTGCCGACGATGACGTA--TTT 960 Query 1339 GGCTATCAAGAGCGTTATGCGGAATATAGATACAAGCCAAGTTCTG---TAACTGGCAAA 1395 || || ||||| | ||||| ||||| | |||||||| |||| | | ||| || Sbjct 959 GGTTACCAAGAAAGGTATGCTGAATACCGCTACAAGCC---CTCTGAAATCAGAGGCCAA 903 Query 1396 TTCCGTTC 1403 |||||||| Sbjct 902 TTCCGTTC 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13076096660710