Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_026262.1 Length=2478 Score E Sequences producing significant alignments: (Bits) Value seq171168 369 6e-99 >seq171168 Length=2613 Score = 369 bits (408), Expect = 6e-99 Identities = 500/701 (71%), Gaps = 37/701 (5%) Strand=Plus/Plus Query 1484 CGTAAAATGTGTAATGTTTAAACGACGTAGTAATGCAGCTAAAGTTTCCTCGTCTAAATC 1543 ||| || ||||| || |||||||||| | ||| ||| |||| ||||| | |||||||| Sbjct 227 CGTGAAGTGTGTTATAGTTAAACGACGCAATAAAGCACCTAACGTTTCATTATCTAAATC 286 Query 1544 AGGATACCATTGTCGTGGGTCGAGATTGCTGGTGATCCATACGGTTTCTGCGGCAAGTAC 1603 ||| ||||| |||| |||||||| || || |||| ||| | |||| ||| || || || Sbjct 287 AGGGTACCAGAGTCGGGGGTCGAGGTTACTAGTGACCCAGATGGTTGTTGCAGCGAGGAC 346 Query 1604 CACACTCGAACCTTTGACTTCGACAACAACGGGGTATCGATCGAACCATCGTAAGAGGTG 1663 || ||||||||| || ||||| || || || ||||||||||||||||| ||||| || Sbjct 347 AACCGACGAACCTTTAACCTCGACGACCACAGGATATCGATCGAACCATCGCAAGAGATG 406 Query 1664 TGCGACATCAATTCCACCGCGGAACTCGTCGATAACAACGTGTCGATGACTGCGGTAACC 1723 |||||||| |||||||| || ||||| ||||||||||| || |||| |||||||| Sbjct 407 GGCGACATCGATTCCACCTCGAAACTCATCGATAACAACATGCGCGTGACCTCGGTAACC 466 Query 1724 GTCCCAAAATTTGGTGCGAGGATCTTTAGGGAAAGCGTCCATACCCGCTTCTGCCCAGGC 1783 ||||||||||||| |||||||| |||||||||||||| | ||| || || ||||||| Sbjct 467 ATCCCAAAATTTGGACCGAGGATCCTTAGGGAAAGCGTCGAGACCGGCCTCGTCCCAGGC 526 Query 1784 TCGTCGAGATTTGCCTGTCCCAGTGCGGCCCCAATACACGTTAATCGTTCGTTCCAATCC 1843 ||| || |||||||| |||||||| |||||| ||||||||| ||||| | ||| Sbjct 527 TCGACGTGATTTGCCGCTCCCAGTGACGCCCCAGAACACGTTAACACGGCGTTCGATTCC 586 Query 1844 AATAGGCGCCATATTATCGACTGCGATTCGTTTGAGGTTCCC------------------ 1885 | | || |||||| ||||| || || ||||||||||| || Sbjct 587 AGTTGGGACCATATGGTCGACAGCAATGCGTTTGAGGTTGCCTAAAGAATAAGAATAAAA 646 Query 1886 -GTACAAT----CTACAGAAA------------ATATCTGCCGGGATATCGTCCATCCGT 1928 ||| ||| ||| | || ||||| || |||||||| |||| |||| Sbjct 647 AGTAAAATAAAAGTACCGTAAAGTCGCACATATATATCCGCTGGGATATCATCCAACCGT 706 Query 1929 CCACGTTTTGCGTTTTCCCGTACGGCTTCCCAATC-GCAAGACTCACCTCGTCGGATTGG 1987 |||| | || ||| || ||||| |||||||| ||| | |||||| ||| | || Sbjct 707 CCACTTCGAGCTGCTTCACGAACGGCATCCCAATCTGCACTA-ACACCTCTTCGAACAGG 765 Query 1988 TAAAGTCCCGAGTTCAAATCCGGTTCCATCAACTCGCGTATCTTTCTTGTGAACATACTT 2047 | || ||||||||||| | || ||||| ||||| | ||| || || | Sbjct 766 TTGGGTTCCGAGTTCAAAACGTGTGTTGTCAACGGCGGTATCGTCCTTCCAGACGTATTC 825 Query 2048 TCGTGCTGCATCTGATCGTGTTGGTTCGGCGTGGCAGGAGTCCCCAAAAATGGATTTGAC 2107 ||| || || || || || || |||||||| ||| || |||||||| || | ||||| Sbjct 826 TCGGGCGGCGTCAGAGCGAGTGGGTTCGGCATGGGCCGAATCCCCAAAGATTGCCTTGAC 885 Query 2108 TCCTCCGAGGCGAATCTTTCGAGCGAAGGAAACAACGATCT 2148 |||| || || | ||||||| |||| ||||||||| Sbjct 886 ACCTCGAAGTCGGAGTTTTCGAGGGAAGTGCGCAACGATCT 926 Score = 96.9 bits (106), Expect = 5e-17 Identities = 124/167 (74%), Gaps = 3/167 (2%) Strand=Plus/Plus Query 828 AGATTATCGAAATTCTATAGTTCATGTGATGGTTAAGTCTGATTTAAAAGTACAGAATCG 887 ||||||| || ||||| || | | ||| ||||||||||| || |||| ||||| Sbjct 2184 AGATTATAGAGATTCTTATGTATCTATAATGTCAAAGTCTGATTTGAAGATACAAAATCG 2243 Query 888 TACCTTGGCTACAGGTACAGACGAAGATAATAATTCAT-CAGAAAATATTGCTAATCAAC 946 ||| | ||| |||||| ||||| ||| |||| | || | ||||| |||| ||||||| Sbjct 2244 TACAATTGCTCAAGGTACTGACGATGAT-ATAAATAATGCTGAAAACGTTGCAAATCAAC 2302 Query 947 CGTTATATGGTAAGTTTTATCATGGAAAAGGCAATGG-TGTATTTGC 992 | |||||||| || ||| |||||||||| ||||| | |||||| Sbjct 2303 CATTATATGGCAAAGCATATTATGGAAAAGGAAATGGATTGATTTGC 2349 Score = 78.8 bits (86), Expect = 1e-11 Identities = 72/91 (79%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 2182 GTTCGAGTTGGCCGGAGATGTGGTTAACGTTTGGCGGGAGGTATGGTGTGAAATCGGCAT 2241 |||| || || || ||||| ||| || ||||||||||| |||||| ||||||||| Sbjct 1046 GTTCAAGCTGTCCTCGGATGTAGTTGACAGACGGCGGGAGGTACGGTGTGTAATCGGCAT 1105 Query 2242 GAGGGATAGTTAAGATCCAAAAGCGTGCTTG 2272 |||| ||||||| ||||| ||||| ||||| Sbjct 1106 GAGGTATAGTTAGTATCCAGAAGCGAGCTTG 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7806474166504