Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_026625.1 Length=2656 Score E Sequences producing significant alignments: (Bits) Value seq171168 536 2e-149 >seq171168 Length=2613 Score = 536 bits (594), Expect = 2e-149 Identities = 531/694 (77%), Gaps = 37/694 (5%) Strand=Plus/Plus Query 1535 AATTGTGTGATTTTTAGTCGGCGAAGTAACGCTGCTAGTGTTTCAGCGTCTAGATCAGCA 1594 || ||||| || ||| || || | ||| || ||| |||||| |||| ||||| Sbjct 231 AAGTGTGTTATAGTTAAACGACGCAATAAAGCACCTAACGTTTCATTATCTAAATCAGGG 290 Query 1595 TACCATTCTCGGGGGTCGAGGTTTGAAGTAATCCAAATGTGTTTGGCGGATAAGACGACA 1654 ||||| ||||||||||||||| ||| | ||| ||| | | || | | ||| || Sbjct 291 TACCAGAGTCGGGGGTCGAGGTTACTAGTGACCCAGATGGTTGTTGCAGCGAGGACAACC 350 Query 1655 GACGAACCTTTAACCTCGACGACCACAGGATATCGGTCGAACCAGCGGAGGAGATGGGCG 1714 ||||||||||||||||||||||||||||||||||| |||||||| || | |||||||||| Sbjct 351 GACGAACCTTTAACCTCGACGACCACAGGATATCGATCGAACCATCGCAAGAGATGGGCG 410 Query 1715 ACATCGATTCCACCTCGAAACTCGTCGATAACAACGTTTTCGTGACCTCGGTAGCCATCC 1774 ||||||||||||||||||||||| ||||||||||| | ||||||||||||| |||||| Sbjct 411 ACATCGATTCCACCTCGAAACTCATCGATAACAACATGCGCGTGACCTCGGTAACCATCC 470 Query 1775 CAAAACTTGGTCCGAGGATCCTTAGGGAAAGCGTCGAGACCAGCTTCATTCCAGGCTCTT 1834 ||||| |||| |||||||||||||||||||||||||||||| || || | |||||||| Sbjct 471 CAAAATTTGGACCGAGGATCCTTAGGGAAAGCGTCGAGACCGGCCTCGTCCCAGGCTCGA 530 Query 1835 CGAGATTTCCCTGAACCAGTGACGCCCCAGTACACGTTAACTTCTCGTTCGATTCCAAGC 1894 || ||||| || ||||||||||||||| |||||||||| |||||||||||| Sbjct 531 CGTGATTTGCCGCTCCCAGTGACGCCCCAGAACACGTTAACACGGCGTTCGATTCCAGTT 590 Query 1895 GGGACCATATGGTCGACAGCAATTCTCTTGAAGTTG------------------------ 1930 ||||||||||||||||||||||| | |||| |||| Sbjct 591 GGGACCATATGGTCGACAGCAATGCGTTTGAGGTTGCCTAAAGAATAAGAATAAAAAGTA 650 Query 1931 -----------CCATAAAGTCG-ACAGTATATATCGGCCGGGATATCATCCAACCGTCCA 1978 || |||||||| ||| |||||||| || ||||||||||||||||||||| Sbjct 651 AAATAAAAGTACCGTAAAGTCGCACA-TATATATCCGCTGGGATATCATCCAACCGTCCA 709 Query 1979 CGTTTTGCTGATTCGCGGACGGCATCCCAATCGTGACTAACACCTCGTCGAACGGGTATT 2038 | | |||| ||| || |||||||||||||| ||||||||||| |||||| ||| Sbjct 710 CTTCGAGCTGCTTCACGAACGGCATCCCAATCTGCACTAACACCTCTTCGAACAGGTTGG 769 Query 2039 TTGCCAAGTTCGAATCGAGTATTGGGGACGGCCGAATCCTCCTTCCAAACGTATTCGCGC 2098 | || ||||| || || || ||| ||||| | ||| |||||||| |||||||| || Sbjct 770 GTTCCGAGTTCAAAACGTGTGTTGTCAACGGCGGTATCGTCCTTCCAGACGTATTCTCGG 829 Query 2099 GCAGCATCGGATCGGGTAGGTTCGGCATGGGTCGAATCCCCAAAGATTCCCTTGACACCT 2158 || || || || || || ||||||||||||| |||||||||||||||| ||||||||||| Sbjct 830 GCGGCGTCAGAGCGAGTGGGTTCGGCATGGGCCGAATCCCCAAAGATTGCCTTGACACCT 889 Query 2159 CCGAGTCGGACCTTTCTGGCGAAGTGGACAACGA 2192 | ||||||| |||| | |||||| |||||| Sbjct 890 CGAAGTCGGAGTTTTCGAGGGAAGTGCGCAACGA 923 Score = 127 bits (140), Expect = 3e-26 Identities = 103/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 2195 TGCCAGTGAAGAAATCCTCCATCTCCGCGTTCAAGTTGTCCGCGGAGATAATCGACGGTT 2254 ||||| |||||||| |||||||||||| ||||||| ||||| |||| || | ||| | Sbjct 1018 TGCCAATGAAGAAAGCCTCCATCTCCGAGTTCAAGCTGTCCTCGGATGTAGTTGACAGAC 1077 Query 2255 GGGGGGAGGTACGGTAGGAAATCGGCATGTCGAATTGTTAAGATCCAGAAGCGAGCTTGG 2314 || |||||||||||| | |||||||||| | || |||| |||||||||||||||||| Sbjct 1078 GGCGGGAGGTACGGTGTGTAATCGGCATGAGGTATAGTTAGTATCCAGAAGCGAGCTTGG 1137 Query 2315 TTCAT 2319 ||||| Sbjct 1138 TTCAT 1142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8375030795652