Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_027637.1 Length=4656 Score E Sequences producing significant alignments: (Bits) Value seq172227 120 9e-24 seq8165 120 9e-24 seq160671 114 4e-22 seq6488 89.7 2e-14 seq172207 87.8 5e-14 seq152702 86.0 2e-13 >seq172227 Length=4743 Score = 120 bits (132), Expect = 9e-24 Identities = 226/329 (69%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 1102 CATGGTTTTACTAAGAGTTTCCCTGAACATGGTTTTATCCTTGGTCTTATGTCTATTCGT 1161 ||||||||| ||||| || |||| ||| || |||| |||||||| | ||||| Sbjct 627 CATGGTTTTGCTAAGTCGTTTACTGAGCATTGTGTTATTATTGGTCTTGCTAGTGTTCGT 568 Query 1162 GCTGATTATACATATCAGCAGGGTGCTGAAAGATTCTGGTTCCGCAAAGCTCGTTTCGAT 1221 ||||||| | |||||||| ||| | | | | |||| ||| | |||| | ||| Sbjct 567 GCTGATTTGAATTATCAGCAAGGTCTTAACCGTATGTGGTCTCGCCAGACTCGCTATGAT 508 Query 1222 CTTTATACTCCTGAGTTTGCTAATCTTGGCGAACAAGCCGTTTTAAACCAAGAGATTTAT 1281 | ||| ||||| |||| | ||||| |||||||| ||||| | | || |||||| Sbjct 507 TTCTATTATCCTGCACTTGCACACCTTGGTGAACAAGCTGTTTTGAGTAAGGAAATTTAT 448 Query 1282 GCTCAAGGAACTTCTGCTGATCAAGAGCC---TTTTGGTTACCAAGAAGCATGGGCTGAA 1338 || | || ||||||||| | || | ||||||||| || ||| | |||||| Sbjct 447 GCGGACGG---CTCTGCTGATGACGATACTGTTTTTGGTTATCAGGAACGTTATGCTGAA 391 Query 1339 TTGCGTTATAAGCCTTCTCGTATTTCTGGTTATTTTCGAAGTAATGCCACTGGTA--CTT 1396 | || |||||||| ||| ||| ||||| | || || |||| | | | | | ||| Sbjct 390 TATCGCTATAAGCCCTCTTTGATTACTGGTCAGTTCCGTAGTACT--TATTCGCAATCTT 333 Query 1397 TAGATGCTTGGCATTTATCCCAGGAATTT 1425 | |||||||||||||| | ||| ||||| Sbjct 332 TGGATGCTTGGCATTTGGCTCAGAAATTT 304 >seq8165 Length=2345 Score = 120 bits (132), Expect = 9e-24 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 460 AATGATTGGTATCGCGATCAGAATTTACAAGATTCTGTTGTTTTGCCTAATGGTGATGGT 519 ||||| |||| || ||||| ||| |||| ||||||||||| | || || |||||| Sbjct 1676 AATGAATGGTTCCGTGATCAAAATATACAGGATTCTGTTGTAGTAGATACTGATGATGGA 1617 Query 520 CCTGATGCTCCTACTGATTATGTTTTGTTGCCTCGTGGTAAACGCCACGATTATTTTACC 579 |||||| || || ||||||| ||| || ||||||||||| || ||||||||||| Sbjct 1616 CCTGATACTGATAGTGATTATACTTTATTAAGACGTGGTAAACGTCATGATTATTTTACT 1557 Query 580 TCTGCACTTCCTACACCTCAGAAGGGTGCTGCTGTTCAGCTTCCACTTGGT 630 ||||| |||||| ||||| || ||| ||| |||| | | || |||||| Sbjct 1556 TCTGCTCTTCCTTGGCCTCAAAAAGGTCCTGGTGTTGAATTGCCTCTTGGT 1506 Score = 86.0 bits (94), Expect = 2e-13 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 1213 CGTTTCGATCTTTATACTCCTGAGTTTGCTAATCTTGGCGAACAAGCCGTTTTAAACCAA 1272 ||||||||| | ||| |||| ||||| ||||||| || || | || | || || Sbjct 909 CGTTTCGATTTATATTGGCCTGCTCTTGCTCATCTTGGAGAGCAGTCTATTCTTAATAAA 850 Query 1273 GAGATTTATGCTCAAGGAACTTCTGCTGATCAAGAGCCTTTTGGTTACCAAGAAGCATGG 1332 ||||||||||||||||| ||||| |||||| | || |||||| || || ||| ||| Sbjct 849 GAGATTTATGCTCAAGGTACTTCAGCTGATGATGAAGTTTTTGGATATCAGGAACGCTGG 790 Query 1333 GCTGAATTGCGTTATAAGCCTTCTCGTATTTCTGGTTATTTTCGA---AGTAATGCCACT 1389 ||||| | | ||| | || || ||| |||| | || ||| | | |||| || Sbjct 789 GCTGAGTATAGGTATTATCCGTCAAAAATTACTGGACAATTGCGATCTACTTATGCGAC- 731 Query 1390 GGTACTTTAGATGCTTGGCATTTATCCCAGGA 1421 ||||||||| |||||||| || || || Sbjct 730 --ATCTTTAGATGTATGGCATTTGTCTCAAGA 701 >seq160671 Length=4645 Score = 114 bits (126), Expect = 4e-22 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 475 GATCAGAATTTACAAGATTCTGTTGTTTTGCCTAATGGTGATGGTCCTGATGCTCCTACT 534 || || ||||||||||||||||||||| | || | |||||||| ||| || || Sbjct 3471 GACCAAAATTTACAAGATTCTGTTGTTGTAGACAAGGACGATGGTCCAGATAGCCCAACA 3412 Query 535 GATTATGTTTTGTTGCCTCGTGGTAAACGCCACGATTATTTTACCTCTGCACTTCCTACA 594 |||||||| || || | | ||||||||||| ||||||||||| ||| || || Sbjct 3411 GATTATGTATTATTAAATAGAGGTAAACGCCATGATTATTTTACTTCTTGCCTACCGTTT 3352 Query 595 CCTCAGAAGGGTGCTGCTGTTCAGCTTCCACTTGGTACTACCGCACCTATT 645 ||||| || |||| ||||||||| || || || || || || ||||||||| Sbjct 3351 CCTCAAAAAGGTGATGCTGTTCAACTACCTCTAGGCACAACTGCACCTATT 3301 Score = 102 bits (112), Expect = 2e-18 Identities = 275/419 (66%), Gaps = 4/419 (1%) Strand=Plus/Minus Query 1057 CCTCAAGGTACTCTTTCTGCCTTTGCTACAGCTGTTGGTTATGA--TCATGGTTTTACTA 1114 |||||||| | | | || || |||| ||| | | ||| | || | ||| || |||| Sbjct 2931 CCTCAAGGAAATTTATCAGCTTTTGGTACTACAGGTGG--AAGACTTGGTGGATTCACTA 2874 Query 1115 AGAGTTTCCCTGAACATGGTTTTATCCTTGGTCTTATGTCTATTCGTGCTGATTATACAT 1174 ||||||| | |||||| || || | | || || | | | | |||||| ||| | Sbjct 2873 AGAGTTTTACAGAACATTGTGTTTTATTAGGACTAGCATGTGTGAGAGCTGATCTTACTT 2814 Query 1175 ATCAGCAGGGTGCTGAAAGATTCTGGTTCCGCAAAGCTCGTTTCGATCTTTATACTCCTG 1234 |||| | ||| || | |||| || || | || | |||| ||||| || Sbjct 2813 ATCAAGAAGGTTTAGACCGCAAATGGTCACGACAAACACGGTACGATTTTTATTGGCCAT 2754 Query 1235 AGTTTGCTAATCTTGGCGAACAAGCCGTTTTAAACCAAGAGATTTATGCTCAAGGAACTT 1294 || ||| || ||||||||||||| || |||||| ||||||||||||| | |||| || Sbjct 2753 CATTAGCTCATATTGGCGAACAAGCTGTATTAAACAAAGAGATTTATGCAGATGGAAGTT 2694 Query 1295 CTGCTGATCAAGAGCCTTTTGGTTACCAAGAAGCATGGGCTGAATTGCGTTATAAGCCTT 1354 | || ||| |||| ||||||||| || ||| || | |||| | ||| |||| Sbjct 2693 CAGCAGATGAAGATGTTTTTGGTTATCAGGAAAGATATGGAGAATATAGATATTTTCCTT 2634 Query 1355 CTCGTATTTCTGGTTATTTTCGAAGTAATGCCACTGGTACTTTAGATGCTTGGCATTTAT 1414 | ||| | || | ||| |||| ||||| |||| | | ||| ||||||| | | Sbjct 2633 CAAAAATTACAGGATTGTTTAGAAGCAATGCAACTGCATCACTTGATTATTGGCATCTTT 2574 Query 1415 CCCAGGAATTTACATCCCCTCCAACTCTTTCACCTGCTTTTATTATTGAAAATCCACCT 1473 | || |||||| || ||||| ||| | |||| || |||||||||||| Sbjct 2573 CTCAAGAATTTGGTTCGTTACCAACACTTAATGATTCTTTCATACAAGAAAATCCACCT 2515 >seq6488 Length=2331 Score = 89.7 bits (98), Expect = 2e-14 Identities = 166/240 (69%), Gaps = 8/240 (3%) Strand=Plus/Minus Query 1057 CCTCAAGGTACTCTTTCTGCCTTTGCTACAGCTGTTGGTTATGATC---ATGGTTTTACT 1113 || || || | |||| |||| || | ||| ||| |||| |||| ||||||||||| Sbjct 1480 CCCCAGGGCAATCTTGCTGCTTTCGGTAC---TGTCGGTTTCGATCGCCATGGTTTTACT 1424 Query 1114 AAGAGTTTCCCTGAACATGGTTTTATCCTTGGTCTTATGTCTATTCGTGCTGATTATACA 1173 ||| |||| | ||||| ||| ||| |||| || || | || | || ||| ||| Sbjct 1423 AAGTCTTTCACCGAACACGGTCACATCATTGGAATTGCGTGTGTTAGAGCCGATATTACC 1364 Query 1174 TATCAGCAGGGTGCTGAA-AGATTCTGGTTCCGCAAAGCTCGTTTCGATCTTTATACTCC 1232 |||||||| || ||||| | | |||| ||| | | || | ||| ||||| || Sbjct 1363 TATCAGCAAGG-ACTGAACCGCATGTGGTCTCGCCAGGACCGGTATGATTTTTATTGGCC 1305 Query 1233 TGAGTTTGCTAATCTTGGCGAACAAGCCGTTTTAAACCAAGAGATTTATGCTCAAGGAAC 1292 || ||||| | || |||||||||||||| | || | || |||||||| ||||| || Sbjct 1304 TGCACTTGCTCACCTGGGCGAACAAGCCGTACTGAATAAGGAAATTTATGCACAAGGCAC 1245 >seq172207 Length=4585 Score = 87.8 bits (96), Expect = 5e-14 Identities = 311/486 (64%), Gaps = 20/486 (4%) Strand=Plus/Minus Query 871 CTTGAACGTGATATGCGTAGTGGCACACGTTACACTGAAGTGTTGCTTGGACATTGGGGA 930 ||||| |||||| ||| |||| ||||| || |||||| | | | | ||||| ||| Sbjct 3983 CTTGAGCGTGATGCGCGAGGTGGTACACGGTATACTGAAATCATCCAGGCACATTTCGGA 3924 Query 931 ATTGCTGCCCAGGACGCCCGTTTGCAACGTAGCGAATATCTTGGTGGCGGTTCAACACAG 990 | || | | ||||| || ||||| | ||||| || || ||||| || || | | Sbjct 3923 GTAACTTCAGATGACGCACGACTGCAAAGACCGGAATACCTCGGAGGCGGCTCGACGCCG 3864 Query 991 ATTAATTTCCATCCTGTCGCTCAGACTGCACCTTCTGATGCATCTGGTTCTGGTGAGGAA 1050 || ||| | ||| | |||||||| | | |||| ||| | || Sbjct 3863 ATCAATGTTTCGCCTATTCCTCAGACTTCTTCAACTGACGCAAC--------------AA 3818 Query 1051 TCCTCGCCTCAAGGTACTCTTTCTGCCTTTGCTACAGCTGTTGGTTATGATCATGGTTTT 1110 | |||||||||| | | |||| ||| ||| ||| | | | |||||||||| Sbjct 3817 ----CTCCTCAAGGTAATTTGGCTGCTATTGGTACTGCTTCTTTTAGCGGTCATGGTTTT 3762 Query 1111 ACTAAGAGTTTCCCTGAACATGGTTTTATCCTTGGTCTTATGTCTATTCGTGCTGATTAT 1170 | |||| |||| | || || | ||||| | |||||| | | || | || |||| Sbjct 3761 AGTAAGTCTTTCACCGAGCACAATATTATCATCGGTCTTGTTAGTGTTAGAGCAGATTTA 3702 Query 1171 ACATATCAGCAGGGTGCTGAA-AGATTCTGGTTCCGCAAAGCTCGTTTCGATCTTTATAC 1229 || ||||||||||| || || | | |||| ||| ||| |||| ||| |||| Sbjct 3701 ACCTATCAGCAGGG-ACTAAACCGGATGTGGTCCCGGCAAGGCCGTTATGATTTTTACTG 3643 Query 1230 TCCTGAGTTTGCTAATCTTGGCGAACAAGCCGTTTTAAACCAAGAGATTTATGCTCAAGG 1289 || | | | ||| || |||| || || || || | || |||| ||||| || ||||| Sbjct 3642 GCCCGCGCTCGCTCATATTGGTGAGCAGGCGGTGCTTAATAAAGAAATTTACGCACAAGG 3583 Query 1290 AACTTCTGCTGATCAAGAGCCTTTTGGTTACCAAGAAGCATGGGCTGAATTGCGTTATAA 1349 || | | |||| | || ||||| ||||| || | || |||| || ||||| Sbjct 3582 GACAGCAGATGATGACGAAGTGTTTGGATACCAGGAGCGTTACGCAGAATACCGCTATAA 3523 Query 1350 GCCTTC 1355 ||| || Sbjct 3522 GCCGTC 3517 >seq152702 Length=1717 Score = 86.0 bits (94), Expect = 2e-13 Identities = 114/158 (72%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 92 ATAAGACTACTTGTAACGCCGGTATGTTGATTCCGTTTCTTATTGATGAGATTTATCCTG 151 ||||||| |||| | || ||| ||| | || || || ||||||| ||| |||| Sbjct 1331 ATAAGACGACTTTAGATGCGGGTTATTTGGTACCTGTTTTTGTTGATGAAGTTTTGCCTG 1390 Query 152 GCGATACTTTTAAGCTTCGTTCTACTTTTCTTGCTCGTATGTCTACTCCCATTTATCCGG 211 | |||||||| || ||||||||||||||| ||| |||| | | ||||| ||| |||| Sbjct 1391 GAGATACTTTGAATCTTCGTTCTACTTTTTTTGGTCGTTTAGCGACTCCTCTTTTTCCGA 1450 Query 212 TTATGGACAATTTATTCATCGATACCCAATTTTTCTTT 249 | ||||| ||| | || | ||| | ||||||||| Sbjct 1451 TCATGGATAATCTTTTTTTAGATTC---TTTTTTCTTT 1485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14759316724265