Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_027647.1 Length=4199 Score E Sequences producing significant alignments: (Bits) Value seq161379 86.0 2e-13 >seq161379 Length=4406 Score = 86.0 bits (94), Expect = 2e-13 Identities = 348/534 (65%), Gaps = 32/534 (6%) Strand=Plus/Plus Query 799 ACAATCAATGACCTCAGGCGAGCCTTCAGGCTTCAGGAATGGCTCGaaaaaaaTGCACGT 858 ||||||| ||||| ||| |||| ||||| |||||||||||||| ||| |||||| | Sbjct 1723 ACAATCACAGACCTTAGGAGAGCTTTCAGACTTCAGGAATGGCTTGAACTCAATGCAAGA 1782 Query 859 GCAGGTACTCGGTACATCGAAAATATACTGGCACACTTCGGTGTGAACTCCTCAGACAAA 918 | |||||| | |||| |||| ||| ||| ||||| || || || || ||||| Sbjct 1783 GGTGGTACTAGATACAAAGAAAGCATAAAGGCCCACTTTGGCGTTAATTCATCAGATGGT 1842 Query 919 CGGTTACAAAGACCGGAATACATCTGTGGACTTAAG---ACACCAGTAGTTATCTCGGAA 975 | |||| | || |||||| | | ||| | || | | || | || || || ||| Sbjct 1843 AGACTACAGCGCCCAGAATACCTTGGCGGA--TCAGTCCAAAACA-TGGTAATTTCAGAA 1899 Query 976 GTACTAAATACTACAGGGGCTCCCGATG-----GGC-TGGCTCAAGGTAATATGGCTGGT 1029 ||||| ||| ||| | |||| ||| | | || | | ||||| Sbjct 1900 GTACTCGCAACTGCAGAAAAT---GATGTATCAGGCGTACCAGTCGGAGACCTTGCTGGA 1956 Query 1030 CATGGTATCGCAGCACACTCAGCAAAAGACGGATCT---TATTCCTGTGAAGAACACGGA 1086 |||||||| ||||| ||| |||| | || | || | || ||||||||||| Sbjct 1957 CATGGTATATCAGCAGGTGCAGGAAAACA---ATTTAGCTACTATTGCGAAGAACACGGT 2013 Query 1087 CTAATCATGGGCGTCATGTCCATTATGCCTAATACTGCATATCAACAAGGCATACATAAA 1146 || || || | || | | ||||| || || |||||||| ||| | ||| Sbjct 2014 TGGATAATTGGAATTATCAACGTACAGCCTATCACAGCCTATCAACAGGGCCTTGCCAAA 2073 Query 1147 TCTTGGTCTAAATTCGATCAACTGGACTACTTCTGGCCTACTTTC--GCACATCTTGGCG 1204 |||| | | |||| ||||||| | |||||| | ||| ||||| |||| | Sbjct 2074 CTTTGGAGCAGAAATGATCGGTTGGACTATTACTGGCCATCATTCCAGCACA--TTGGAG 2131 Query 1205 AGCAGGAGGTACTTAA--TCAGGAGGTATA-TGCTCA-ATCT-TCTGATCCGGGTGGAAC 1259 ||||||| || | || || || |||| || | || | ||| | || | ||| Sbjct 2132 AGCAGGAAGT--TAAACTTCGCGAATTATACTGGGAAGATATAGATGACCAGGAAGAAAC 2189 Query 1260 TTTCGGTTACGTTCCCCGTTATTCGGAGTATAAATTCATGCCTAATCGCGTAGC 1313 || |||||||||||| | ||| |||| ||||||| ||| ||||| |||||||| Sbjct 2190 ATTTGGTTACGTTCCCAGGTATGCGGAATATAAATACATACCTAACCGCGTAGC 2243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13299674278260