Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_027792.1 Length=1895 Score E Sequences producing significant alignments: (Bits) Value seq170627 87.8 2e-14 >seq170627 Length=2270 Score = 87.8 bits (96), Expect = 2e-14 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 1181 CCCTTGATTTCCACGTTGACCGGGTAACGATCGAGCCAGCGGAGCAGATGCGCGATGTCG 1240 || || ||||| ||| || ||||||||||| ||||| | ||||| || |||| | Sbjct 1514 CCTTTAATTTCAACGATGGTTGGGTAACGATCCAGCCATCTGAGCATGTGACTGATGCTG 1573 Query 1241 ATACCTCCTCGAAATTCATCAATGACAACGTGAAGC-TGATCCCGGTAACCGTCCCAAAA 1299 || | |||| ||||||||| || || || || | ||| | |||||||||||||| || Sbjct 1574 ATTGCGCCTCTAAATTCATCGATAACCAC-CGATTCTTGACCTCGGTAACCGTCCCAGAA 1632 Query 1300 CTTGGTTCGAGGGTCCTTAGGATAAGCGTCCATACCGGCTTCTGACCAGGCTCGATGAGA 1359 || | |||||||| |||||||| || | ||||| |||||| || | || Sbjct 1633 TTTCGAGTTGGGGTCCTTGGGATAAGCATCGAAGGTCGCTTCCTCCCAGGCGCGTTTTGA 1692 Query 1360 CTTTCCAGTTCCAGTCGGTCCC 1381 || ||||| || || | |||| Sbjct 1693 TTTGCCAGTGCCCGTTGCTCCC 1714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5944291499126