Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_027796.1 Length=1826 Score E Sequences producing significant alignments: (Bits) Value seq170258 80.6 3e-12 >seq170258 Length=2091 Score = 80.6 bits (88), Expect = 3e-12 Identities = 134/194 (69%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 600 AAGCCAGCCAACAAATGGTGGGATGGATACAACAATCAGGCTGTTGTAATTATTGACGAT 659 |||||||| || || ||||||||||| ||| | ||| ||| | || | ||||| ||| Sbjct 969 AAGCCAGCTAATAAGTGGTGGGATGGGTACCAAAATGAGGATTACGTTTTGATTGATGAT 1028 Query 660 TTAGATTCA------GATGCTCTAGGTCATCACTTAAAGATCTGGGCTGATCACTACCCC 713 || ||| || || | | |||||||||| || || || ||| |||| ||| | Sbjct 1029 TTGGATACAAAACATGAAGTTTTAGGTCATCATTTGAAAATATGGTCTGACAGATACTCT 1088 Query 714 TTTATTGCGGAATTCAAAGGTGGTGCCCAAAACATTCGACCTCATAAGATAGTTGTCACC 773 |||||||| ||| | ||||| || || || | ||| | || | || || |||| || Sbjct 1089 TTTATTGCCGAAATTAAAGGAGGCGCTAAACATATTAGGCCAAAGAAATTAATTGTGACT 1148 Query 774 TCCAACTACTCCAT 787 || | ||||| || Sbjct 1149 TCACAATACTCTAT 1162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5723895951872