Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_029012.1 Length=4623 Score E Sequences producing significant alignments: (Bits) Value seq170754 96.9 1e-16 >seq170754 Length=2340 Score = 96.9 bits (106), Expect = 1e-16 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 154 GAAATGCTGGTTCGTTTGGCTCCGCTGGTCGCTCCCATGATGCATCGAGTGGATGTGTTC 213 ||||| || | ||| ||||||| || | ||||| | ||||||||||| ||||||| Sbjct 892 GAAATTATGCTGCGTATGGCTCCAATGATTGCTCCGGTCATGCATCGAGTAAATGTGTTT 833 Query 214 ACTCATTATTTCTTTGTTCCCAATCGCCTCCTTTGGAATCAATGGGAGGATTTTATTACG 273 || |||| ||||| || || || || | |||||||||||||||| ||||| || || Sbjct 832 ACACATTTCTTCTTCGTACCGAACCGTATTATTTGGAATCAATGGGAAGATTTCATCACT 773 Query 274 AAAGGTGTTGATGGTACTGATACGCCTGTCTTTCCAAA 311 |||| || ||| || |||||| | |||||||| Sbjct 772 GGTGGTGCCGACGGTCAGGAAACGCCTTTATTTCCAAA 735 Score = 78.8 bits (86), Expect = 3e-11 Identities = 114/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 919 TTACAGCGTTGGTTTGAGCGTAATGCCCGTTCTGGTTCTCGTTATATCGAGCAGATCCTC 978 ||||| |||| |||| || ||||| || |||||||||||| || || || || | Sbjct 172 TTACAAACTTGGCTTGAACGCAATGCTCGCGGTGGTTCTCGTTACATTGAACAAATTTTA 113 Query 979 TCGCATTTCGGTGTACGTAGTTCTGACGCTCGTTTGCAGCGTCCGCAGTTCCTCGGTGGT 1038 || ||||| |||||| |||||||| | ||||| || ||||| ||| || |||||| Sbjct 112 TCTCATTTTGGTGTAAAAAGTTCTGATTCACGTTTACAACGTCCTGAGTATCTTGGTGGT 53 Query 1039 GGTCGTACCCCCATTTCTGTTTCCGAGGTTCTTCAAACGTC 1079 || | ||| || | |||| || ||| | ||||| || Sbjct 52 GGAAAAAATCCCGTTGTTATTTCGGAAGTTTTACAAACTTC 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14653915847420