Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_029014.1 Length=5001 Score E Sequences producing significant alignments: (Bits) Value seq170754 89.7 2e-14 seq172111 84.2 7e-13 >seq170754 Length=2340 Score = 89.7 bits (98), Expect = 2e-14 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 972 TTGGTTCGAACGTAACGCTCGTGGTGGTTCTCGTTATATTGAACAGATTCTGTCACACTT 1031 |||| | ||||| || ||||| |||||||||||||| |||||||| ||| | || || || Sbjct 164 TTGGCTTGAACGCAATGCTCGCGGTGGTTCTCGTTACATTGAACAAATTTTATCTCATTT 105 Query 1032 TGGTGTTCGTTCATCTGATGCGCGTTTACAGCGTCCGCAGTTCCTCGGTGGCGGTCGTAT 1091 |||||| |||||| | |||||||| ||||| ||| || ||||| || | Sbjct 104 TGGTGTAAAAAGTTCTGATTCACGTTTACAACGTCCTGAGTATCTTGGTGGTGGAAAAAA 45 Query 1092 GCCTATTTCTGTGTCGGAAGTATTGCAAACATCCTCGACTGA 1133 || || | | |||||||| || ||||| || || |||| Sbjct 44 TCCCGTTGTTATTTCGGAAGTTTTACAAACTTCATCATCTGA 3 >seq172111 Length=4147 Score = 84.2 bits (92), Expect = 7e-13 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 988 GCTCGTGGTGGTTCTCGTTATATTGAACAGATTCTGTCACACTTTGGTGTTCGTTCATCT 1047 |||||||||||| ||||||||| ||||| |||| | ||||| |||||| |||| || Sbjct 3366 GCTCGTGGTGGTACTCGTTATACTGAACTTATTCGTGCTCACTTCGGTGTTACTTCACCT 3425 Query 1048 GATGCGCGTTTACAGCGTCCGCAGTTCCTCGGTGGCGGTCGTATGC 1093 ||||| |||||||| ||||| | | ||||| || || ||||| Sbjct 3426 GATGCTCGTTTACAACGTCCAGAATATCTCGGCGGTGGAACTATGC 3471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15861234982190