Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_030455.1 Length=3021 Score E Sequences producing significant alignments: (Bits) Value seq171168 141 2e-30 >seq171168 Length=2613 Score = 141 bits (156), Expect = 2e-30 Identities = 234/333 (70%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 734 GTTTATGTGTTTTGGGGTAGTACAGGAACTGGAAAATCTCGTCGTGCTTGGGATGAAGCG 793 ||| | ||||| ||||| || || | || ||||| ||||| || ||||| || || Sbjct 571 GTTAACGTGTTCTGGGGCGTCACTGGGAGCGGCAAATCACGTCGAGCCTGGGACGAGGCC 512 Query 794 GGAGAAGGTGCTTACTCTAAGTGTCCACGATCCAAGTTTTGGGATGGCTATCAAGATCAA 853 || | |||| | ||||| ||| || ||||| ||||||||||| || | || ||| Sbjct 511 GGTCTCGACGCTTTCCCTAAGGATCCTCGGTCCAAATTTTGGGATGGTTACCGAGGTCAC 452 Query 854 GAACATGTTGTCATTGATGAATTTCGAGGAGGTATTGATGTGGCGCACCTGCTTCGATGG 913 | |||||||| || ||||| |||||||| || || ||||| || || || | |||||| Sbjct 451 GCGCATGTTGTTATCGATGAGTTTCGAGGTGGAATCGATGTCGCCCATCTCTTGCGATGG 392 Query 914 TTTGATCGTTATCCGGTCCGTGTGGAAATTAAAGGGAGCTCG--CGGCCTTTGGTTGGAA 971 || ||||| ||||| || || || ||||||| ||| | || | | || || Sbjct 391 TTCGATCGATATCCTGTGGTCGTCGAGGTTAAAGGTTCGTCGGTTGTCC--TCGCTGCAA 334 Query 972 GGACAATATGGATCACTTCGAACTTGGAGCCCTCTAGT-TGGTACCCAGGTTTAGATGAA 1030 || || ||| ||||| ||| | || ||| | | | |||||||| | ||||||| | Sbjct 333 CAACCATCTGGGTCACTAGTAACCTCGA-CCCCCGACTCTGGTACCCTGATTTAGATAAT 275 Query 1031 GAAACCTTTCAAGCTTTACTTCGTCGTTTAACT 1063 ||||| || |||||| | |||||||||||| Sbjct 274 GAAACGTTAGGTGCTTTATTGCGTCGTTTAACT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9537182371490