Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_030458.1 Length=5016 Score E Sequences producing significant alignments: (Bits) Value seq172227 226 9e-56 seq172207 143 8e-31 seq171756 131 5e-27 seq6488 123 8e-25 seq172181 122 3e-24 seq59597 113 1e-21 seq8165 95.1 4e-16 seq172159 86.0 2e-13 >seq172227 Length=4743 Score = 226 bits (250), Expect = 9e-56 Identities = 424/606 (70%), Gaps = 24/606 (4%) Strand=Plus/Minus Query 3245 ACTATAAATGACCTTCGAACTGCTTTTCAGATGCAGAGACTGAAGGAGCGTGACGCGCGT 3304 ||||| ||||| ||||| || |||||||| || | || || |||||||| | Sbjct 882 ACTATCAATGAACTTCGTGAAGCGTTTCAGATTCAAGGTCTCTTAGAACGTGACGCTAGA 823 Query 3305 GGTGGAACTCGTTATACCGAGATACTTCGCGCTCATTTTGGCGTTGTCTCTCCCGATAGT 3364 || || || ||||| || ||||| || | |||||||| ||| ||| ||| | Sbjct 822 GGCGGTACACGTTACACAGAGATTATTAAGTCCCATTTTGGTGTTACTAGTCCGGATTAT 763 Query 3365 CGACTTCAGCGTCCTGAGTATCTTGGTGGCGGTGAGATACCGCTCATTGTCTCGTCTGTT 3424 || | || ||||||||||||||||| |||||| | |||| | ||| || || Sbjct 762 CGCATGCAACGTCCTGAGTATCTTGGAGGCGGTTCTACACCGTTGCATGTTAATGCTATT 703 Query 3425 CCGCAGACTTCGTCTTCGGACGCTACTACTCCGCAGGGAAACCTTGCCGCCTACTCTGTG 3484 |||| ||||| ||| | || ||||||| || || || || ||| || ||| || Sbjct 702 GCGCAAACTTCTTCTACTGATGCTACTAGCCCACAAGGTAAT-TTGGCGGCTA-----TG 649 Query 3485 TTTAGTGGTCGCAATACTTGCAGGTGGA----CTAAGTCGTTTGTCGAACACGGCGTTGT 3540 || | || | | | || | ||| ||||||||||| || || | ||| | Sbjct 648 GCTACCGTTCA-AGTTCGTGGACATGGTTTTGCTAAGTCGTTTACTGAGCATTGTGTTAT 590 Query 3541 TATTGGTCTTTGCTC-TGTTCGAGCCGACCTTGAAT-ATCAGCAGGGTCTTAATCGGATG 3598 |||||||||| ||| |||||| || || |||||| ||||||| |||||||| || ||| Sbjct 589 TATTGGTCTT-GCTAGTGTTCGTGCTGAT-TTGAATTATCAGCAAGGTCTTAACCGTATG 532 Query 3599 TGGTCGCGTAGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCAAATCTTGGTGAACAG 3658 ||||| || ||| |||||||| ||||||| ||||| || ||| | ||||||||||| Sbjct 531 TGGTCTCGCCAGACTCGCTATGATTTCTATTATCCTGCACTTGCACACCTTGGTGAACAA 472 Query 3659 GCCGTGCTTAACAAAGAGATTTATGCCGATTCGACCGACGGC-AAGGATGATGAGGTTTT 3717 || || | | || || |||||||| || || | | || | || ||| ||||| Sbjct 471 GCTGTTTTGAGTAAGGAAATTTATGCGGA--CGGC--TCTGCTGATGACGATACTGTTTT 416 Query 3718 TGGCTATCAAGAGAGGTGGAGC-GAGTATCGCTATAAGCCCTCTATGATTACTGGCAAGC 3776 ||| ||||| || | || || || |||||||||||||||||| |||||||||| || Sbjct 415 TGGTTATCAGGA-ACGTTATGCTGAATATCGCTATAAGCCCTCTTTGATTACTGGTCAGT 357 Query 3777 TGCGTTCTAATGACCCTCAGTCTCTCGATGTTTGGCATTTGGCTCA-AAATTTCATCGAG 3835 | ||| || | | | || ||| | |||| ||||||||||||||| |||||| || || Sbjct 356 TCCGTAGTACTTATTCGCAATCTTTGGATGCTTGGCATTTGGCTCAGAAATTTGAT-GAC 298 Query 3836 CGTCCT 3841 || ||| Sbjct 297 CGCCCT 292 >seq172207 Length=4585 Score = 143 bits (158), Expect = 8e-31 Identities = 339/504 (67%), Gaps = 26/504 (5%) Strand=Plus/Minus Query 3266 GCTTTTCAGATGCAGAGACTGAAGGAGCGTGACGCGCGTGGTGGAACTCGTTATACCGAG 3325 || |||||||| |||| | || |||||||| ||||| ||||| || || ||||| || Sbjct 4004 GCATTTCAGATTCAGAAATTGCTTGAGCGTGATGCGCGAGGTGGTACACGGTATACTGAA 3945 Query 3326 ATACTTCGCGCTCATTTTGGCGTTGTCTCTCCCGATAGTCGACTTCAGCGTCCTGAGTAT 3385 || | | || ||||| || || || || ||||| || | || || || Sbjct 3944 ATCATCCAGGCACATTTCGGAGTAACTTCAGATGACGCACGACTGCAAAGACCGGAATAC 3885 Query 3386 CTTGGTGGCGGTGAGATACCGCTCATTGTCTCGTCTGTTCCGCAGACTTCGTCTTCGGAC 3445 || || ||||| || ||| ||| ||| ||| || |||| |||||||| || | ||| Sbjct 3884 CTCGGAGGCGGCTCGACGCCGATCAATGTTTCGCCTATTCCTCAGACTTCTTCAACTGAC 3825 Query 3446 GCTACTACTCCGCAGGGAAACCTTGCCGCC-----TACT-CTGTGTTTAGTGGTCGCAAT 3499 || || ||||| || || || | || || |||| || ||||| |||| || Sbjct 3824 GCAACAACTCCTCAAGGTAATTTGGCTGCTATTGGTACTGCTTCTTTTAGCGGTC---AT 3768 Query 3500 ACTTGCAGGTGGACTAAGTCGTTTGTCGAACACGGCGTTGTTATTGGTCTTTGCTCTGTT 3559 || || |||||| || ||| ||| || | || |||||| |||| Sbjct 3767 GGTTTTAG------TAAGTCTTTCACCGAGCACAATATTATCATCGGTCTTGTTAGTGTT 3714 Query 3560 CGAGCCGACCTTGAA--TATCAGCAGGGTCTTAATCGGATGTGGTCGC-GTAGGACGCGC 3616 |||| || || || ||||||||||| || || ||||||||||| | | | | | || Sbjct 3713 AGAGCAGA--TTTAACCTATCAGCAGGGACTAAACCGGATGTGGTCCCGGCAAGGC-CGT 3657 Query 3617 TATGACTTCTATTGGCCTGCCCTCGCAAATCTTGGTGAACAGGCCGTGCTTAACAAAGAG 3676 ||||| || || ||||| || ||||| || ||||||| ||||| |||||||| ||||| Sbjct 3656 TATGATTTTTACTGGCCCGCGCTCGCTCATATTGGTGAGCAGGCGGTGCTTAATAAAGAA 3597 Query 3677 ATTTATGCCGATTCGACCGACGGCA-AGGATGATGAGGTTTTTGGCTATCAAGAGAGGTG 3735 ||||| || | | ||| ||| | ||||| || || ||||| || || ||| | | Sbjct 3596 ATTTACGC----ACAAGGGACAGCAGATGATGACGAAGTGTTTGGATACCAGGAGCGTTA 3541 Query 3736 GAGCGAGTATCGCTATAAGCCCTC 3759 || || ||||||||||| || Sbjct 3540 CGCAGAATACCGCTATAAGCCGTC 3517 >seq171756 Length=3219 Score = 131 bits (144), Expect = 5e-27 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 3516 AGTCGTTTGTCGAACACGGCGTTGTTATTGGTCTTTGCTCTGTTCGAGCCGACCTTGAAT 3575 |||||||| ||||||| || | |||||||| ||| || |||||| || ||||| | Sbjct 175 AGTCGTTTACCGAACACTGCATCGTTATTGGGCTTGTCTGTGTTCGTGCAGACCTGACGT 116 Query 3576 ATCAGCAGGGTCTTAATCGGATGTGGTCGCGTAGGACGCGCTATGACTTCTATTGGCCTG 3635 |||||||||| || || || |||||||| || ||| ||||| |||| ||| ||||| | Sbjct 115 ATCAGCAGGGCCTCAACCGCATGTGGTCTCGGCAGACCCGCTACGACTACTACTGGCCGG 56 Query 3636 CCCTCGCAAATCTTGGTGAACAGGCCGTGCTTAACAAAGAGATTTAT 3682 | ||||| | |||| |||||||||||||| || || || |||||| Sbjct 55 CGCTCGCTCACATTGGCGAACAGGCCGTGCTGAATAAGGAAATTTAT 9 >seq6488 Length=2331 Score = 123 bits (136), Expect = 8e-25 Identities = 224/323 (69%), Gaps = 15/323 (5%) Strand=Plus/Minus Query 3368 CTTCAGCGTCCTGAGTATCTTGGTGGCGGTGAGATACCGCTCATTGTCTCGTCTGTTCCG 3427 || || |||||||| || |||||||| || | | ||| ||| ||| ||||||| Sbjct 1567 CTACAACGTCCTGAATACCTTGGTGGAGGATCAACCCGTGTCAATGTTTCGCCTGTTCCT 1508 Query 3428 CAGACTTCGTCTTCGGACGCTACTACTCCGCAGGGAAACCTTGCCGCCTACT---CTGT- 3483 || ||||| ||| | || || || ||||| ||||| || ||||| || | | |||| Sbjct 1507 CAAACTTCTTCTACAGATGCGACCACTCCCCAGGGCAATCTTGCTGCTTTCGGTACTGTC 1448 Query 3484 -GTTTAGTGGTCGCAATACTTGCAGGTGGACTAAGTCGTTTGTCGAACACGGCGTTGTTA 3542 |||| | |||| || || | ||||||| || ||||||||| | | Sbjct 1447 GGTTTCGA--TCGCCATGGTTTTA------CTAAGTCTTTCACCGAACACGGTCACATCA 1396 Query 3543 TTGGTCTTTGCTCTGTTCGAGCCGACCTTGAATATCAGCAGGGTCTTAATCGGATGTGGT 3602 |||| || | |||| ||||||| || |||||||| || || || || ||||||| Sbjct 1395 TTGGAATTGCGTGTGTTAGAGCCGATATTACCTATCAGCAAGGACTGAACCGCATGTGGT 1336 Query 3603 CGCGT-AGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCAAATCTTGGTGAACAGGCC 3661 | || ||||| || ||||| || ||||||||||| || || | || || ||||| ||| Sbjct 1335 CTCGCCAGGAC-CGGTATGATTTTTATTGGCCTGCACTTGCTCACCTGGGCGAACAAGCC 1277 Query 3662 GTGCTTAACAAAGAGATTTATGC 3684 || || || || || |||||||| Sbjct 1276 GTACTGAATAAGGAAATTTATGC 1254 >seq172181 Length=4472 Score = 122 bits (134), Expect = 3e-24 Identities = 249/364 (68%), Gaps = 11/364 (3%) Strand=Plus/Plus Query 3556 TGTTCGAGCCGACCTTGAATATCAGCAGGGTCTTAATCGGATGTGGTCGCGTAGGACGCG 3615 |||| | || ||||| ||||| ||||| || || | ||||| ||| ||| Sbjct 3472 TGTTAGGGCTGACCTAACTTATCAACAGGGACTCGATAAACTCTGGTCCCGTTCTACGAA 3531 Query 3616 CTATGACTTCTATTGGCCTGCCCTCGCAAATCTTGGTGAACAGGCCGTGCTTAACAAAGA 3675 ||||| ||||| ||||| || ||||| ||||||||||||||||||| | || ||||| Sbjct 3532 ATATGATTTCTACTGGCCGGCTCTCGCTCATCTTGGTGAACAGGCCGTCTTAAATAAAGA 3591 Query 3676 GATTTATGCCGATTCGA-CCGACGGCAAGGATGATGAGGTTTTTGGCTATCAAGA--GAG 3732 || ||||| || | | || ||| |||||| ||||||||| |||||||| || Sbjct 3592 AATCTATGC----TCAAGCTGATTCCAATGATGATCTGGTTTTTGGGTATCAAGAACGAT 3647 Query 3733 GTGGAGCGAGTATCGCTATAAGCCCTCTATGATTACTGGCAAGCTGCGTTCTAATGACCC 3792 |||| || || || ||||| | ||| |||||||| || || ||||| | | | | Sbjct 3648 ATGGA--GAATACCGTTATAAACAATCTCGAATTACTGGTAAACTCCGTTCAACTTATGC 3705 Query 3793 TCAGTCTCTCGATGTTTGGCATTTGGCTCAAAATTTCATCG-AGCGTCCTACCCTCTCGT 3851 | ||||| ||| | |||||| || | || | ||| ||| | |||||| ||||| Sbjct 3706 TACCTCTCTTGATCTCTGGCATCTGTCGGAAGAGTTC-TCGTCTCTTCCTACTCTCTCCG 3764 Query 3852 CTGATTTCATTAAAGACGCTCCGCCTATTAAGCGTGTTTTGGCCGTGCAGGATGAACCCG 3911 ||| ||||| |||| | | || ||| | || || || || || || ||||| | Sbjct 3765 CTGCGTTCATCGAAGAAAATACTCCGATTGATCGCGTATTAGCGGTTACTGACGAACCTG 3824 Query 3912 AGTT 3915 | || Sbjct 3825 ATTT 3828 >seq59597 Length=4602 Score = 113 bits (124), Expect = 1e-21 Identities = 348/530 (66%), Gaps = 10/530 (2%) Strand=Plus/Plus Query 3290 GAGCGTGACGCGCGTGGTGGAACTCGTTATACCGAGATACTTCGCGCTCATTTTGGCGTT 3349 ||||||||||| ||| || ||||| || || ||||| | | ||||||||||| || Sbjct 2480 GAGCGTGACGCTCGTTCAGGTACTCGGTACACTGAGATCATCCAAGCTCATTTTGGTGTG 2539 Query 3350 GTCTCTCCCGATAGTCGACTTCAGCGTCCTGAGTATCTTGGTGGCGGTGAGATACCGCTC 3409 ||| || ||| | ||||| || ||||| || |||||||| || | | || Sbjct 2540 ACCTCGCCGGATGCCAGGCTTCAACGCCCTGAATACCTTGGTGGAGGATCAACCCGTGTC 2599 Query 3410 ATTGTCTCGTCTGTTCCGCAGACTTCGTCTTCGGACGCTACTACTCCGCAGGGAAACCTT 3469 | || | || || ||||| ||| |||| ||||| || || || || |||||| Sbjct 2600 AACGTTAATCCGGTGCCTCAGACAAGTTCTACGGATGCTACAACGCCACAAGGCAACCTT 2659 Query 3470 GCCGCCTACTCTG-TGTTTAGTGGTCGCAATACTTGCAGGTGGACTAAGTCGTTTGTCGA 3528 || || | | |||| || ||| | || | | ||||| || || || Sbjct 2660 GCGGCTTTTGGTACTGTTGGGT--TCGATCGTCATG--GCTTTACTAAATCCTTCACAGA 2715 Query 3529 ACACGGCGTTGTTATTGGTCTTTGCTCTGTTCGAGCCGACCTTGAATATCAGCAGGGTCT 3588 || || | |||| ||| || | ||||| ||||| || |||||||| ||||| Sbjct 2716 GCATGGACATATTATCGGTATTGCTTGCGTTCGGGCCGATCTGACCTATCAGCAAGGTCT 2775 Query 3589 TAATCGGATGTGGTCGCGT-AGGACGCGCTATGACTTCTATTGGCCTGCCCTCGCAAATC 3647 || || |||||||| ||| |||| || || ||||| ||||||||||| | || || Sbjct 2776 CAACCGTATGTGGTCACGTCAGGAT-CGGTACGACTTTTATTGGCCTGCATTGGCTCATT 2834 Query 3648 TTGGTGAACAGGCCGTGCTTAACAAAGAGATTTATGCCGATTCGACCGACGGCAAGGATG 3707 | |||||||| || || || || || ||||||||||| | | | | ||| || | Sbjct 2835 TGGGTGAACAAGCGGTACTCAATAAGGAGATTTATGCACA-AGGCACAAGCGCA--GACG 2891 Query 3708 ATGAGGTTTTTGGCTATCAAGAGAGGTGGAGCGAGTATCGCTATAAGCCCTCTATGATTA 3767 |||| || ||||| ||||| || ||| || || || ||||| || || ||||| Sbjct 2892 ATGACGTATTTGGATATCAGGAACGGTACGCAGAATACCGTTATAAACCGTCACAGATTA 2951 Query 3768 CTGGCAAGCTGCGTTCTAATGACCCTCAGTCTCTCGATGTTTGGCATTTG 3817 | || | | || || |||| || |||||||| |||||| || Sbjct 2952 CCGGAGCGTTCCGGTCAAATGCATCTACCTCTCTCGACACGTGGCATCTG 3001 >seq8165 Length=2345 Score = 95.1 bits (104), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 3620 GACTTCTATTGGCCTGCCCTCGCAAATCTTGGTGAACAGGCCGTGCTTAACAAAGAGATT 3679 || || ||||||||||| || || ||||||| || ||| | | ||||| ||||||||| Sbjct 903 GATTTATATTGGCCTGCTCTTGCTCATCTTGGAGAGCAGTCTATTCTTAATAAAGAGATT 844 Query 3680 TATGCCGATTCGACCGACGGCA-AGGATGATGAGGTTTTTGGCTATCAAGAGAGGTGGAG 3738 ||||| || | || || |||||||| |||||||| ||||| || | ||| Sbjct 843 TATGC----TCAAGGTACTTCAGCTGATGATGAAGTTTTTGGATATCAGGAACGCTGGGC 788 Query 3739 CGAGTATCGCTATAAGCCCTCTATGATTACTGGCAAGCTGCGTTCTAATGACCCTCAGTC 3798 |||||| | ||| | || || | |||||||| | |||| |||| | | | || Sbjct 787 TGAGTATAGGTATTATCCGTCAAAAATTACTGGACAATTGCGATCTACTTATGCGACATC 728 Query 3799 TCTCGATGTTTGGCATTTGGCTCAA 3823 | | ||||| ||||||||| ||||| Sbjct 727 TTTAGATGTATGGCATTTGTCTCAA 703 >seq172159 Length=4363 Score = 86.0 bits (94), Expect = 2e-13 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 3260 CGAACTGCTTTTCAGATGCAGAGACTGAAGGAGCGTGACGCGCGTGGTGGAACTCGTTAT 3319 ||||| || ||||| | |||||||| | ||||| ||||| ||||| || || |||||| Sbjct 3682 CGAACAGCGTTTCAACTACAGAGACTATACGAGCGAGACGCTCGTGGCGGGACACGTTAT 3741 Query 3320 ACCGAGATACTTCGCGCTCATTTTGGCGTTGTCTCTCCCGATAGTCGACTTCAGCGTCCT 3379 || || || | || | || ||||||||||| || ||||| ||| || || | ||| Sbjct 3742 ACAGAAATTGTGCGATCGCACTTTGGCGTTGTTTCGCCCGACGCTCGCCTACAAAGACCT 3801 Query 3380 GAGTATCTTGGTGGCGG 3396 || || || ||||| || Sbjct 3802 GAATACCTCGGTGGTGG 3818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15909144471665