Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_030469.1 Length=2433 Score E Sequences producing significant alignments: (Bits) Value seq171168 140 5e-30 seq98325 98.7 2e-17 seq98324 98.7 2e-17 >seq171168 Length=2613 Score = 140 bits (154), Expect = 5e-30 Identities = 200/276 (72%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 1372 GGAAAATCGAGAAGAGCCTGGGAAGAAGCCGGT-TGGACTGCTTATCCTAAAGATCCGAG 1430 || ||||| | |||||||||| || |||||| | ||| |||| ||||| ||||| | Sbjct 541 GGCAAATCACGTCGAGCCTGGGACGAGGCCGGTCTCGAC-GCTTTCCCTAAGGATCCTCG 483 Query 1431 AAGCAAATTTTGGGATGGATACTCAGATCAGAAGAATGTTGTATTTGATGAATTTCGAGG 1490 ||||||||||||||| ||| || ||| | ||||||| | ||||| |||||||| Sbjct 482 GTCCAAATTTTGGGATGGTTACCGAGGTCACGCGCATGTTGTTATCGATGAGTTTCGAGG 423 Query 1491 AGGAATCGATATTTCCCATATATTGCGATGGTTTGATCGCTACCCAGTACTCGTTGAAAT 1550 ||||||||| | ||||| | ||||||||||| ||||| || || || |||| || | Sbjct 422 TGGAATCGATGTCGCCCATCTCTTGCGATGGTTCGATCGATATCCTGTGGTCGTCGAGGT 363 Query 1551 CAAGGGAGCTTCAACG--TGT-TTGGTAGCAGAAAACATCTGGATTACTAGTAACTTGCA 1607 || || ||| || ||| | | ||| || ||||||| | ||||||||| | | Sbjct 362 TAA---AGGTTCGTCGGTTGTCCTCGCTGCAACAACCATCTGGGTCACTAGTAACCTCGA 306 Query 1608 CCCCAAGGACTGGTATCCAGATTTAGATTATGTAAC 1643 |||| |||||| || ||||||||| ||| ||| Sbjct 305 CCCCCGACTCTGGTACCCTGATTTAGATAATGAAAC 270 >seq98325 Length=1549 Score = 98.7 bits (108), Expect = 2e-17 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1357 GGACCTACAGGTACTGGAAAATCGAGAAGAGCCTGGGAAGAAGCCGG-TTGGACTGCTTA 1415 || || || || || || ||||| | | || ||||| |||||| || || ||| || Sbjct 1047 GGCCCAACCGGCACCGGCAAATCCCGCCGTGCTTGGGATGAAGCCACCTTTGA-TGCATA 1105 Query 1416 TCCTAAAGATCCGAGAAGCAAATTTTGGGATGGATACTCAGATCAGAAGAATGTTGTATT 1475 ||| || || || | | ||||||||||||||||||||| | |||| |||||| ||||| Sbjct 1106 TCCCAAGGACCCTATGACCAAATTTTGGGATGGATACTCTGGTCAGCTGAATGTAGTATT 1165 Query 1476 TGATGAATTTCGAGGAGGAATCGATATTTCCCATATATTGCGATGGTTTGATCGCTACCC 1535 |||||| | | |||||| || || || || | ||| ||||||| ||| | ||||| Sbjct 1166 TGATGAGTATAGAGGAGATATATCAATATCACACCTTTTGAGATGGTTCGATAGGTACCC 1225 Query 1536 AGT 1538 || Sbjct 1226 TGT 1228 >seq98324 Length=1501 Score = 98.7 bits (108), Expect = 2e-17 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1357 GGACCTACAGGTACTGGAAAATCGAGAAGAGCCTGGGAAGAAGCCGG-TTGGACTGCTTA 1415 || || || || || || ||||| | | || ||||| |||||| || || ||| || Sbjct 999 GGCCCAACCGGCACCGGCAAATCCCGCCGTGCTTGGGATGAAGCCACCTTTGA-TGCATA 1057 Query 1416 TCCTAAAGATCCGAGAAGCAAATTTTGGGATGGATACTCAGATCAGAAGAATGTTGTATT 1475 ||| || || || | | ||||||||||||||||||||| | |||| |||||| ||||| Sbjct 1058 TCCCAAGGACCCTATGACCAAATTTTGGGATGGATACTCTGGTCAGCTGAATGTAGTATT 1117 Query 1476 TGATGAATTTCGAGGAGGAATCGATATTTCCCATATATTGCGATGGTTTGATCGCTACCC 1535 |||||| | | |||||| || || || || | ||| ||||||| ||| | ||||| Sbjct 1118 TGATGAGTATAGAGGAGATATATCAATATCACACCTTTTGAGATGGTTCGATAGGTACCC 1177 Query 1536 AGT 1538 || Sbjct 1178 TGT 1180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7662737940034