Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_030474.1 Length=2854 Score E Sequences producing significant alignments: (Bits) Value seq170627 159 6e-36 seq171168 141 2e-30 seq98325 77.0 6e-11 seq98324 77.0 6e-11 >seq170627 Length=2270 Score = 159 bits (176), Expect = 6e-36 Identities = 251/357 (70%), Gaps = 2/357 (1%) Strand=Plus/Minus Query 942 GAGAAGCGGGTCTTTGTTTTCTGGGGCGCAACTGGCACAGGGAAGTCTCGACGAGCCTGG 1001 ||||| | ||||| || | ||||| ||||| ||||| || || || ||| |||||| Sbjct 1737 GAGAAACAAGTCTTCGTCTATTGGGGAGCAACGGGCACTGGCAAATCAAAACGCGCCTGG 1678 Query 1002 GAAGAAGCCGGAATCAGTGCTTATCCTAAAGACCCCCGGTCCAAGTTTTGGGATGGGTAC 1061 || ||||| || ||||||||| || |||||| || || || ||||| || ||| Sbjct 1677 GAGGAAGCGACCTTCGATGCTTATCCCAAGGACCCCAACTCGAAATTCTGGGACGGTTAC 1618 Query 1062 CGTAGCCATGAGTCGGTGGTTATCGATGAATTTCGGGGCGGCATTGATATATCCCATATG 1121 || | || || ||||||||||||||||||||| | |||| || || || ||| Sbjct 1617 CGAGGTCAAGAATCGGTGGTTATCGATGAATTTAGAGGCGCAATCAGCATCAGTCACATG 1558 Query 1122 CTCCGATGGTTGGATCGGCACCCTGTTATTGTAGAAGT-AAAGGGTAGTTCGGTCGTATT 1180 ||| ||||| ||||||| |||| || || ||| | ||||||| ||| ||| | Sbjct 1557 CTCAGATGGCTGGATCGTTACCCAACCATCGTTGAAATTAAAGGGTC-TTCATGCGTTCT 1499 Query 1181 TAGCGCAAGAACTATATGGATCACAAGCAACTTGTCACCAGATACTTGGTATCCCGGTAT 1240 || ||||| | | |||||||| |||||| | || || || | |||||| | | | Sbjct 1498 TAACGCAAAGAGAGTCTGGATCACTAGCAACCTCTCGCCTGAAATGTGGTATTCTGAACT 1439 Query 1241 TGACGAAGAAACACGTTTAGCGTTACGTAGACGCTTCACTCAAGTTGTACATTTTAA 1297 ||||| ||||| | || ||||||||||| || || ||||| | |||||||| Sbjct 1438 GGACGACGAAACGAAATCTGCATTACGTAGACGTTTTACACAAGTAATTCATTTTAA 1382 >seq171168 Length=2613 Score = 141 bits (156), Expect = 2e-30 Identities = 219/313 (70%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 899 CCTCCGACGTATCGGCGTCGACCATCTTGTCCCTGTTGCAGTCGAGAAGCGGGTCTTTGT 958 |||| ||| || | ||||||||| | ||||| || | |||| || || || Sbjct 623 CCTCAAACGCATTGCTGTCGACCATATGGTCCCAACTGGAATCGAACGCCGTGTTAACGT 564 Query 959 TTTCTGGGGCGCAACTGGCACAGGGAAGTCTCGACGAGCCTGGGAAGAAGCCGGAATCAG 1018 |||||||||| ||||| | || || || || ||||||||||| || ||||| || Sbjct 563 GTTCTGGGGCGTCACTGGGAGCGGCAAATCACGTCGAGCCTGGGACGAGGCCGGTCTCGA 504 Query 1019 TGCTTATCCTAAAGACCCCCGGTCCAAGTTTTGGGATGGGTACCGTAGCCATGAGTCGGT 1078 |||| ||||| || || |||||||| ||||||||||| ||||| | || | | || Sbjct 503 CGCTTTCCCTAAGGATCCTCGGTCCAAATTTTGGGATGGTTACCGAGGTCACGCGCATGT 444 Query 1079 GGTTATCGATGAATTTCGGGGCGGCATTGATATATCCCATATGCTCCGATGGTTGGATCG 1138 ||||||||||| ||||| || || || ||| | ||||| | | |||||||| ||||| Sbjct 443 TGTTATCGATGAGTTTCGAGGTGGAATCGATGTCGCCCATCTCTTGCGATGGTTCGATCG 384 Query 1139 GCACCCTGTTATTGTAGAAGTAAAGGGTAGTTCGGTCGTATTTAGCGCAAGAACTATATG 1198 | ||||| | || || || || ||| ||||| || | |||| ||| || || Sbjct 383 ATATCCTGTGGTCGTCGAGGTTAAAGGTTCGTCGGTTGTCCTCGCTGCAACAACCATCTG 324 Query 1199 GATCACAAGCAAC 1211 | |||| || ||| Sbjct 323 GGTCACTAGTAAC 311 >seq98325 Length=1549 Score = 77.0 bits (84), Expect = 6e-11 Identities = 153/225 (68%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 936 GCAGTCGAGAAGCGGGTCTTTGTTTTCTGGGGCGCAACTGGCACAGGGAAGTCTCGACGA 995 ||| | ||||| | || | |||| ||||||| |||| ||||| || || || || || Sbjct 1017 GCAATTGAGAAACAAGTAGTAGTTTACTGGGGCCCAACCGGCACCGGCAAATCCCGCCGT 1076 Query 996 GCCTGGGAAGAAGCCGGAATCAGTGCTTATCCTAAAGACCCCCGGTCCAAGTTTTGGGAT 1055 || ||||| |||||| | ||| ||||| || ||||| | |||| ||||||||| Sbjct 1077 GCTTGGGATGAAGCCACCTTTGATGCATATCCCAAGGACCCTATGACCAAATTTTGGGAT 1136 Query 1056 GGGTACCGTAGCCA--TGAGTCGGTGGTTATCGATGAATTTCGGGGCGGCATTGATATAT 1113 || ||| | | || ||| | || || | ||||| | | | || | || |||| Sbjct 1137 GGATACTCTGGTCAGCTGAAT--GTAGTATTTGATGAGTATAGAGGAGATATATCAATAT 1194 Query 1114 CCCATATGCTCCGATGGTTGGATCGGCACCCTGTTATTGTAGAAG 1158 | || | | ||||||| ||| || |||||||| ||| |||| Sbjct 1195 CACACCTTTTGAGATGGTTCGATAGGTACCCTGTTTGTGTGGAAG 1239 >seq98324 Length=1501 Score = 77.0 bits (84), Expect = 6e-11 Identities = 153/225 (68%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 936 GCAGTCGAGAAGCGGGTCTTTGTTTTCTGGGGCGCAACTGGCACAGGGAAGTCTCGACGA 995 ||| | ||||| | || | |||| ||||||| |||| ||||| || || || || || Sbjct 969 GCAATTGAGAAACAAGTAGTAGTTTACTGGGGCCCAACCGGCACCGGCAAATCCCGCCGT 1028 Query 996 GCCTGGGAAGAAGCCGGAATCAGTGCTTATCCTAAAGACCCCCGGTCCAAGTTTTGGGAT 1055 || ||||| |||||| | ||| ||||| || ||||| | |||| ||||||||| Sbjct 1029 GCTTGGGATGAAGCCACCTTTGATGCATATCCCAAGGACCCTATGACCAAATTTTGGGAT 1088 Query 1056 GGGTACCGTAGCCA--TGAGTCGGTGGTTATCGATGAATTTCGGGGCGGCATTGATATAT 1113 || ||| | | || ||| | || || | ||||| | | | || | || |||| Sbjct 1089 GGATACTCTGGTCAGCTGAAT--GTAGTATTTGATGAGTATAGAGGAGATATATCAATAT 1146 Query 1114 CCCATATGCTCCGATGGTTGGATCGGCACCCTGTTATTGTAGAAG 1158 | || | | ||||||| ||| || |||||||| ||| |||| Sbjct 1147 CACACCTTTTGAGATGGTTCGATAGGTACCCTGTTTGTGTGGAAG 1191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9003790055335