Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cirrula_20hians_20[genbank_20GCA_5F001015075.1_202015-05-29] 172,401 sequences; 399,685,866 total letters Query= NC_030478.1 Length=2522 Score E Sequences producing significant alignments: (Bits) Value seq171168 107 3e-20 >seq171168 Length=2613 Score = 107 bits (118), Expect = 3e-20 Identities = 243/363 (67%), Gaps = 22/363 (6%) Strand=Plus/Minus Query 798 AATGGAACGTGAGGTTCACGTATTTTGGGGAGATACCGGTTCTGGAAAATCCCGCCGGGC 857 ||| ||||| ||| |||| || ||||| | || || || ||||| || || || Sbjct 584 AATCGAACGCCGTGTTAACGTGTTCTGGGGCGTCACTGGGAGCGGCAAATCACGTCGAGC 525 Query 858 TTGGGATGAGGCGGGTTTCAGCGCTTACCCTAAAAGTCCCTGTACAAAATTCTGGGATGG 917 ||||| ||||| ||| || ||||| |||||| ||| | | ||||| |||||||| Sbjct 524 CTGGGACGAGGCCGGTCTCGACGCTTTCCCTAAGGATCCTCGGTCCAAATTTTGGGATGG 465 Query 918 TTACCAAAATCAAGAAAATGTTGTTATCGATGAGTTTAGAGGAGACATCGGTAATATTAA 977 ||||| | ||| | |||||||||||||||||||| |||| | |||| || | Sbjct 464 TTACCGAGGTCACGCGCATGTTGTTATCGATGAGTTTCGAGGTGGAATCG---ATGT--- 411 Query 978 TTAACAAGGCATCTCTCACATGCTCAGATGGTTGGACCGATATCCCGTTTTGGTCGAGAC 1037 ||||||| ||| ||||||| || |||||||| || | |||||| Sbjct 410 -----CGCCCATCTCT----TGC---GATGGTTCGATCGATATCCTGTGGTCGTCGAGGT 363 Query 1038 AAAAGGATCAGGGGTCGTACTGTCTGCTCGCCGAATCTGGATCACGAGTAACATCTCGCC 1097 ||||| || ||| || || |||| |||||| |||| |||||| |||| | Sbjct 362 TAAAGGTTCGTCGGTTGTCCTCGCTGCAACAACCATCTGGGTCACTAGTAAC--CTCGAC 305 Query 1098 TTCCGA--CTGGTATCCTACTTTGGATGCGGACACTACCGCTGCTTTGTTGCGAAGATTA 1155 |||| |||||| ||| ||| ||| || || | |||||| ||||| | ||| Sbjct 304 CCCCGACTCTGGTACCCTGATTTAGATAATGAAACGTTAGGTGCTTTATTGCGTCGTTTA 245 Query 1156 ACT 1158 ||| Sbjct 244 ACT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7947016254608