Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_001330.1 Length=6087 Score E Sequences producing significant alignments: (Bits) Value seq252 717 0.0 >seq252 Length=3317 Score = 717 bits (794), Expect = 0.0 Identities = 892/1217 (73%), Gaps = 61/1217 (5%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 2110 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 2169 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || |||||||||| |||||||| Sbjct 2170 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCATTGAGGCTTGCGTTTATGGT 2229 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2230 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2289 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 2290 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 2349 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 2350 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 2409 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | ||| || || || ||||| Sbjct 2410 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTAACTGACGCAGAAGAAAAC 2469 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGATATG--AAG--AAAGCACGT---- 2971 | ||||| |||||||| ||| | ||| ||| || || | ||| ||| |||| Sbjct 2470 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTG 2529 Query 2972 -CGTTCTCC-TAGTCGTC------------------------------GTAAAGGTGCTC 2999 || || || | |||||| ||||||| |||| Sbjct 2530 GCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTC 2589 Query 3000 GCCTCTGGTATGTAGGCGGTTCTCAGTTTTAATTATGGGCCCTTCGGGGCCTT--TTAAG 3057 | || ||||||||||| ||| || |||||||| || |||||| |||| || || Sbjct 2590 GTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTACTTGAG 2649 Query 3058 GA--AATTCAAATGTCTAATGTACAAACTTCCGCTGAACGTGAAATTGTTGACCTCTCTC 3115 || |||| ||||||||| | |||||| ||| || ||| |||||| || | Sbjct 2650 GATAAATT---ATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTTCCC 2706 Query 3116 ATCTTGCCTT--TGACTGTGGCATGCTTGGTCGTCTGAAGACTGTTTCATGGACTCCTGT 3173 ||| || ||| | ||| | || | |||||||||| | || ||||| ||||| || Sbjct 2707 ATCCTGGCTTCCTTGCTG-GTCA-GATTGGTCGTCTTATTACCATTTCAACTACTCCGGT 2764 Query 3174 TATCGCTGGCGATTCCTTTGAGCTTGATGCTGTTGGTGCTTTGCGTCTTTCCCCTCTGCG 3233 |||||||||||| ||||| ||| | || || ||||| ||| | |||||||| || |||| Sbjct 2765 TATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGCG 2824 Query 3234 TCGTGGTTTAGCTATTGATTCTAAGGTTGATTTTTTCACCTTCTACATTCCGCATCGTCA 3293 |||||| | |||||||| |||| || || |||| || || || | || |||||||| Sbjct 2825 TCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTCA 2884 Query 3294 TGTTTATGGCGACCAGTGGATTCAGTTTATGCGTGATGGTGTTAATGCTCAGCCTCTGCC 3353 |||||||| || ||||||||| |||| ||| | |||||||||||| ||||| || Sbjct 2885 CGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGCTGGTGTTAATGCCACTCCTCTCCC 2944 Query 3354 TTCTGTTA--CTTGCAATCGCTATCCGGACCATGCTGGTTATGTAGGTACTATTGTTCCT 3411 |||||| ||| | | ||| |||||||| | || | | || || ||| ||| Sbjct 2945 GACTGTTAACACTGC--TGGTTATATTGACCATGCCGCTTTTCTTGGCACGATTAACCCT 3002 Query 3412 G---CAAATAACCGTATTCCTAAGTTTTTGCATCAGAGCTATCTGAACATTTACAATAAC 3468 | | ||||| || |||||| |||| |||| | ||| |||| || || || ||| Sbjct 3003 GATACCAATAA---AATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAACAAC 3059 Query 3469 TATTTCCGTGCCCCGTGGATGCCTGAGCGTACCGAGGCCAACCCGTCTAATCTTAATGAG 3528 ||||| || |||||||||||||| ||||||||||| ||||| | | |||||| | Sbjct 3060 TATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTTAATCAA 3119 Query 3529 GATGATGCTCGTTATCGCTTCCGTTGCTGCCACCTTAAAAATATTTGGTCTGCTCCGCTG 3588 ||||||||||||||| | |||||||||||||| || ||||| |||||| |||||||||| Sbjct 3120 GATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCCGCTT 3179 Query 3589 CCTCCGGAAACCAAATTGGCTGAAGAAATGGGTATTGAAAGCAATTCCATTGATATTATG 3648 ||||| || || | | || | ||||| | | | || || ||||| |||||| Sbjct 3180 CCTCCTGAGACTGAGCTTTCTCGACAAATGACGACTTCTACCACATCTATTGACATTATG 3239 Query 3649 GGTTTGCAAGCCGCTTATGCGCAGCTTCACACTGAGCAGGAGCGTACTTACTTTATGCAG 3708 ||| ||||||| |||||||| | | || ||||| || || ||| |||||| |||||| Sbjct 3240 GGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTCATGCAG 3299 Query 3709 CGTTACCGTGATGTTAT 3725 ||||||| ||||||||| Sbjct 3300 CGTTACCATGATGTTAT 3316 Score = 374 bits (414), Expect = 3e-100 Identities = 321/397 (81%), Gaps = 0/397 (0%) Strand=Plus/Plus Query 2560 CAGGCTAGTGCTGTTTTGGATGTTACTGAGGAAGATTTCGATTTTCTGACTGGTGATAAG 2619 |||||| ||| ||||||||| | || || || ||||||||||||||||| || | || Sbjct 500 CAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAA 559 Query 2620 ATTTGGATTGCTACCGACCGTAACCGTGCGCGTCGTTGTGTTGAGGCTTGTGTTTATGGA 2679 ||||||||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 560 GTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGT 619 Query 2680 ACGCTGGACTTTGTTGGATATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 2739 |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 620 ACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTC 679 Query 2740 ATTGCTTATTATGTTCATCCCGTCAATGTACAAACAGCATGCCTCGTTATGGAAGGCGCG 2799 |||||||||||||||||||||||||| | ||||| || || ||| | ||||||||||| Sbjct 680 ATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCT 739 Query 2800 GAGTTTAGCGAAAACATTATCAATGGCGTCGAGCGCCCGGTTAACGCCGCTGAGCTCTTC 2859 || |||| ||||||||||| |||||||||||||| |||||||| |||||||| | ||| Sbjct 740 GAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTC 799 Query 2860 GCGTACACCCTGCGTATTAAAGCAGGATTCAAAGAAACTGTAATGGATGCCGAGGAAAAT 2919 |||| ||| ||||| | |||||| || || | | | || || || ||||| Sbjct 800 GCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAAC 859 Query 2920 GCTCGTCAGAAATTACGCGCAAATGGACTGAAGTGAT 2956 | ||||| |||||||| ||| | ||| ||| || || Sbjct 860 GTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 896 Score = 123 bits (136), Expect = 1e-24 Identities = 188/263 (71%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 1428 AAGGATTCCTACAACGACTGCTATCGCTATCTTTGTGTGCCGGAGTTTGGAGGTCAGC-- 1485 || ||||| || ||||||||||| ||| |||||||||| |||| ||| |||| Sbjct 969 AATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTA--CAGCTA 1026 Query 1486 ACGGCCGTCTTCATTGGCACGTTGTGCATATGGTGCGGACTCTTCCTTTGGGAAGTCATG 1545 | ||||||||||||| || | ||||| | ||||||| |||||| || || || Sbjct 1027 ATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTG 1086 Query 1546 ACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACTCG-TTCCGTGGCATG 1604 |||||||||| ||||| |||||| ||| |||||| |||| | | || | | | Sbjct 1087 ACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAATAGCTTGCAAAATACG 1145 Query 1605 TGGCCTTATGGCTTCACGCAACCGATAGCTGTTCGCTATCAACATGACGCTTATTCCCGC 1664 ||||||||||| | || || || || |||||||| || ||||||| ||| || Sbjct 1146 TGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGT 1205 Query 1665 AAAGGTTGGCTGTGGCCTGTTGA 1687 |||||| ||||||||||||| Sbjct 1206 TCTGGTTGGTTGTGGCCTGTTGA 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19358023563132