Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_001420.2 Length=5577 Score E Sequences producing significant alignments: (Bits) Value seq252 1209 0.0 >seq252 Length=3317 Score = 1209 bits (1340), Expect = 0.0 Identities = 1702/2368 (72%), Gaps = 54/2368 (2%) Strand=Plus/Plus Query 912 CCGACTGCTATCAGTATTTTTGTGTGCCAGAGTATGGTACACAGCACGGTCGTCTACATT 971 |||||||||||||||||||||||||||| |||||||||||| | || ||||| |||| Sbjct 982 CCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTACAGCTAATGGCCGTCTTCATT 1041 Query 972 TCCACGCAGTGCATCTTATGCGCACACTTCCTCTGGGTTCTCTGCACCCTAACTTCGGTA 1031 |||| || ||||| ||||||| ||||||||| ||| | ||||||| || ||| Sbjct 1042 TCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGACCCTAATTTTGGTC 1101 Query 1032 AGCTGGTACGCATCAATCGGCAAATAAATAGCTTGCAAAACACGTGGCCTTATGGTTACT 1091 | |||||||| || || |||||||||||||||| |||||||||||||||||| Sbjct 1102 GTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTGGCCTTATGGTTACA 1161 Query 1092 CTATGCCCATCGCAGTCCGGTACTCCCAAGACGCATTCTCTCGCGCTGGCTGGCTCTGGC 1151 ||||||||||||||| || ||| | || ||||| || || || |||| ||| | |||| Sbjct 1162 GTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTCTGGTTGGTTGTGGC 1221 Query 1152 CTGTGGACTCAAAGGGTGAACCCCTTAAAGCTACCTCGTATATGGCTGTAGGCTTCTACG 1211 |||| || | || ||||| || |||||||||||| ||||||||||| || ||||| | Sbjct 1222 CTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGCTGTTGGTTTCTATG 1281 Query 1212 TTGCTAAATACGTTAACAAAAAATCAGATATTGACATGGCCGTAAAAGGCCTAGGGAATA 1271 | |||||||||||||||||||| |||||||| ||| | || | ||||| ||||| || Sbjct 1282 TGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAAAGGTCTAGGAGCTA 1341 Query 1272 AAGAATGGAACAATTCACTCAAAACCAAAATCAACCTCATACCCAAGAAAGTGTTCAGAA 1331 ||||||||||||| ||||| |||||||| | || | |||||||| ||||||||| Sbjct 1342 AAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAAGAAGCTGTTCAGAA 1401 Query 1332 TACGAATGTCTCGCAATTTCGGAATGAAACTGTTATCAATGGCTCACCTGTCAGCGGAAA 1391 | ||||| ||||| ||||| |||||| || | ||||| | | ||||| |||| Sbjct 1402 TCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAATCTGTCCACGGAGT 1461 Query 1392 CCCTGATGGAACTGACCCAAGTGGGTTACGACGTGACCCCGTTCAACAACATCTTGAAGC 1451 | | || |||| ||| | |||||||||||| ||| ||||||||| | || ||||||| Sbjct 1462 GCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAACCAGATATTGAAGC 1521 Query 1452 AGAACGCCAAGAAAGAGCTCAAATCGAGGCTGGCAAAGAAATCTGTCGCCGACGTTTTGG 1511 ||||||| || | |||| | | || |||||||| ||| |||| ||||||||||||| Sbjct 1522 AGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGTAGCCGACGTTTTGG 1581 Query 1512 AGGCGCAACCTGTGACGACGAATCTGCTAAAATTCATGCGCAATTTGACCCGAACAATCG 1571 |||||||||||||||||| |||||||| ||||| |||||| || || || || | Sbjct 1582 CGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTG 1641 Query 1572 GAGCGTCCAACCTACAGAGTTTTATCGCTTCAATGACCACGAAATTAACAAGTACGGATA 1631 | | |||||||| ||||||||||||||||| ||||| ||| |||||| | |||||| Sbjct 1642 GCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCGGATA 1701 Query 1632 TTTCTGATGAAACCAAAAACTACGTTGCTTCTGCAGGAATTGCTGTTGCTAACTTACGAA 1691 |||||||||| | ||||| || ||| | ||||||||| || |||| ||||||| Sbjct 1702 TTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTACGAA 1761 Query 1692 TTAAATCGAAGTGGACTGCTGGTGGAAAATGAGGAAATTCAATCTCAACTTAAAAAACTC 1751 |||||||||||||||||||||| |||||||||| |||||| | || ||| | ||| Sbjct 1762 TTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCAGCTC 1821 Query 1752 GAGGTCGTCTTACTTTGCAACCTTTCGCCATCATCTCAACG-TGCTGGCAAAAACTGACG 1810 ||| ||||||||||| |||||||||||||| || |||| | ||| |||||||||||| Sbjct 1822 GAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACTGACG 1880 Query 1811 CCCTTGACGAGGAGAAATACTTAAATATGTTAGGTGCTCTCCTCAAGGACTGGTTCCGGT 1870 | | || |||||||| | | |||||| | || | || ||||||||||||| | | Sbjct 1881 CGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTTAGAT 1940 Query 1871 ACGAAGAACATTTCGTGCATGGTAAACAATCAATGCTTGACATACTGAAAGAACGTGGCC 1930 | || |||||| || ||||||| | | || | ||||||| | ||||| ||||| Sbjct 1941 ATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTTAAAAGAGCGTGGAT 2000 Query 1931 TATTATCCACATCGTCAACTGACACAAACCAC--AAAGGAAACTGAAATGTCTAAATCAA 1988 || |||| || ||| |||||| | ||| || ||||| | | |||| Sbjct 2001 TACTATCTGAGTCCGATGCTG--TTCAACCACTAATAGGTAA--GAAAT-CATGAGTCAA 2055 Query 1989 ---AC-GAATCTGCTGTAGCCTTTCAAACTGCTATCGCTTCTATCAAACTTATTCAAGCA 2044 || ||| | ||| || || || ||| | || ||||| || || ||||| || Sbjct 2056 GTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGCT 2115 Query 2045 TCTTCTGTTCTTGACTTGACAGAGGACGATTTTGACTTCTTAACTCGCGACCGTGTCTGG 2104 ||| | ||| | || || || || || ||||| || || | || | || || ||| Sbjct 2116 TCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTGG 2175 Query 2105 ATTGCTACCGACCGTTCACGCGCTCGCCG-TGCTATCGAGGCTTGCGTATATGGAACACT 2163 |||||||| ||||| || || ||||| || ||| || ||||||||||| ||||| || || Sbjct 2176 ATTGCTACTGACCGCTCTCGTGCTCGTCGCTGC-ATTGAGGCTTGCGTTTATGGTACGCT 2234 Query 2164 GGACTTTGTCGGGTATCCTCGCTTTCCTGCTCCTGTTGAGTTTATTTCTGCCGTCATTGC 2223 ||||||||| || || |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2235 GGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGC 2294 Query 2224 TTATTACGTTCATCCCGTTAACATCCAAACCGCCTGTCTCATCATGGAAGGTGCTGAGTT 2283 |||||| ||||||||||| ||||| ||||| |||||||||||||||||||| ||||| || Sbjct 2295 TTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATT 2354 Query 2284 TACCGAAAACATCGTCAATGGTGTTGAACGCCCCGTTAAAGCCTCTGAACTGTTCGCCTT 2343 ||| |||||||| | ||||| || || || || ||||||||| ||||| ||||||| || Sbjct 2355 TACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTT 2414 Query 2344 CACTCTTCTTGTTCGCGCCGGAAACAAAGATCTTATCGGTCACGCTGAAACAAACATCCG 2403 || | | ||| ||||| ||||||| || || | | |||| ||| |||| | || Sbjct 2415 TACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTAACTGACGCAGAAGAAAACGTGCG 2474 Query 2404 TGAACAGTTACGCGCTCAAGGTGTCATGTAAAGACCTTTGATTTTATCGTCTTCACTTTT 2463 | || | ||||| || |||| || |||||| | | | | || | || Sbjct 2475 TCAAAAATTACGTGCAGAAGGAGTGATGTAATG--------TCTAAAGGTAAAAAACGTT 2526 Query 2464 AAGGAGTT----ATGTAATGAAAAAATCAATTCGCCGCTCTGGTGGCAAATCTAAGGGTG 2519 || | | || | | | || | || ||||| ||| || | Sbjct 2527 CTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCG 2586 Query 2520 CCCGTCTCTGGTATGTAGGCGGAACACAATACTAATCTTTTATGTGGGACCGCGGTCCCA 2579 | ||||| ||||||||||| || ||||| ||| || | ||| | ||| ||| Sbjct 2587 CTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAA--TTGCA---GGGGCTTCGGCCCC- 2640 Query 2580 CTCTATTTAAGGATACAAAAATGTCTAACGTTCAAACATCTGCGGACCGTGTACCTCATG 2639 || || |||||| || |||||||| ||||||| || || ||| | || |||| Sbjct 2641 --TTACTTGAGGATA-AATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATG 2697 Query 2640 ACTTATCTCACCTTGTCTTTGAGGCTGGTAAAATTGGCCGCCTCAAAACTATCTCTTGGA 2699 || | || || | || ||| |||||| | ||||| || || | || || || | Sbjct 2698 ACCTTTCCCATCCTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTA 2757 Query 2700 CGCCTGGTGGTGCTGGTGACTCTTTCGAGTGTGATATGGTTGGCGCTATTCGTCTGTCCC 2759 | || | | ||||| ||||| |||||| || ||||||||| | ||||| || | Sbjct 2758 CTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTC 2817 Query 2760 CTCTTCGTCGTGGCCTCGCTGTTGACTCACGCGTTGATATCTTTCCTTTCTATATCCCAC 2819 | | ||||||||||| ||| ||||||| || || || ||| |||| ||| |||| | Sbjct 2818 CATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTC 2877 Query 2820 ACCGTCATATCTACGGTCAGCAGTGGATTAACTTTATGAAGGATGGCGTTAATGCCTCCC 2879 | ||||| | || ||| | ||||||||||| || ||||||| ||| ||||||||| | | Sbjct 2878 ATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGCTGGTGTTAATGCCACTC 2937 Query 2880 CTCTTCCTCCTGTT-ACA-TGCTCCTCTGGTTGGGACTCTGCTGCTTATCTCGGTACCAT 2937 |||| || ||||| ||| |||| | || ||| ||| |||| ||| || || || Sbjct 2938 CTCTCCCGACTGTTAACACTGCTGGTTATATT--GACCATGCCGCTTTTCTTGGCACGAT 2995 Query 2938 TCCGTCTTCTACCCTTAAAGTGCCTAAATTCTTACATCAGGGCTATCTGAATATTTATAA 2997 | || |||| |||| | ||||| || |||||| ||| ||||||| ||||| Sbjct 2996 TAACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTATAA 3055 Query 2998 TAACTACTTCAAACCGCCTTGGTCTGATGACTTAACTTAC----GCTAACCCATCCAATA 3053 ||||| || ||| |||| || |||| || | | ||| ||||||| | ||| Sbjct 3056 CAACTATTTTAAAGCGCCGTG----GATGCCTGACCGTACCGAGGCTAACC---CTAATG 3108 Query 3054 TGCCT--TC-TGAGGATTATAAATGGGGCGTACGTGTCGCTAACCTTAAATCTATCTGGA 3110 || | || || ||| | | || | ||| | | || ||| || |||| Sbjct 3109 AGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGA 3168 Query 3111 CTGCGCCACTTCCACCGGATACTCGTACATCTGAAAACATGACTACTGGTACATCCACTA 3170 |||| || ||||| || || ||| ||| | | ||||| ||| ||| | ||| Sbjct 3169 CTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGACAAATGACGACTTCTACCACATCTA 3228 Query 3171 TTGACATTATGGGCCTTCAAGCCGCATACGCTAAATTACATACGGAACAGGAACGTGATT 3230 ||||||||||||| || ||||| || || ||||| || ||||| || || |||||||||| Sbjct 3229 TTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATT 3288 Query 3231 ACTTCATGACCCGTTACCGTGACATTAT 3258 |||||||| ||||||| ||| |||| Sbjct 3289 ACTTCATGCAGCGTTACCATGATGTTAT 3316 Score = 536 bits (594), Expect = 4e-149 Identities = 667/902 (74%), Gaps = 15/902 (2%) Strand=Plus/Plus Query 1541 AAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAACCTACAGAGTTTTATCGCT 1600 ||||| |||||| || || || || || | |||||||| ||||||||||||||| Sbjct 1 AAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCT 60 Query 1601 TCAATGACCACGAAATTAACAAGTACGGATATTTCTGATGAAACCAAAAACTACGTTGCT 1660 || ||||| ||| |||||| | |||||||||||||||| | ||||| || ||| | Sbjct 61 TCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGAT 120 Query 1661 TCTGCAGGAATTGCTGTTGCTAACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAA 1720 ||||||||| || |||| ||||||| ||||||||||||||||||||| |||||| Sbjct 121 AAAGCAGGAATTACTACTGCTTGTTTACGAACTAAATCGAAGTGGACTGCTGGCGGAAAA 180 Query 1721 TGAGGAAATTCAATCTCAACTTAAAAAACTCGAGGTCGTCTTACTTTGCAACCTTTCGCC 1780 |||| |||||| | || ||| | |||||| ||||||||||| |||||||||| Sbjct 181 TGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCC 240 Query 1781 ATCATCTCAACG-TGCTGGCAAAAACTGACGCCCTTGACGAGGAGAAATACTTAAATATG 1839 |||| || |||| | ||| ||||||||||||| | || |||||||| | | |||||| Sbjct 241 ATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATG 299 Query 1840 TTAGGTGCTCTCCTCAAGGACTGGTTCCGGTACGAAGAACATTTCGTGCATGGTAAACAA 1899 | || | || ||||||||||||| | || || |||||| || ||||||| | | Sbjct 300 CTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGAT 359 Query 1900 TCAATGCTTGACATACTGAAAGAACGTGGCCTATTATCCACATCGTCAACTGACACAAAC 1959 || | || |||| | ||||| ||||| || |||| || ||| ||| Sbjct 360 TCTCTTGTTTACATTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTC--AAC 417 Query 1960 CACAAA--GGAAACTGAAATGTCTAAATCAA---AC-GAATCTGCTGTAGCCTTTCAAAC 2013 ||| || || || ||||| | | |||| || ||| | ||| || || || Sbjct 418 CACTAATAGGTAA--GAAATCA-TGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGAC 474 Query 2014 TGCTATCGCTTCTATCAAACTTATTCAAGCATCTTCTGTTCTTGACTTGACAGAGGACGA 2073 ||| | || ||||| || || ||||| || ||| | ||| | || || || || || || Sbjct 475 CGCTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGA 534 Query 2074 TTTTGACTTCTTAACTCGCGACCGTGTCTGGATTGCTACCGACCGTTCACGCGCTCGCCG 2133 ||| || || | || | || || ||||||||||| ||||| || || ||||| || Sbjct 535 TTTCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCG 594 Query 2134 -TGCTATCGAGGCTTGCGTATATGGAACACTGGACTTTGTCGGGTATCCTCGCTTTCCTG 2192 ||| | ||||||||||| ||||| || ||||||||||| || || ||||||||||||| Sbjct 595 CTGC-GTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTG 653 Query 2193 CTCCTGTTGAGTTTATTTCTGCCGTCATTGCTTATTACGTTCATCCCGTTAACATCCAAA 2252 ||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||| Sbjct 654 CTCCTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAA 713 Query 2253 CCGCCTGTCTCATCATGGAAGGTGCTGAGTTTACCGAAAACATCGTCAATGGTGTTGAAC 2312 | |||||||||||||||||||| ||||| ||||| |||||||| | ||||| || || | Sbjct 714 CGGCCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGC 773 Query 2313 GCCCCGTTAAAGCCTCTGAACTGTTCGCCTTCACTCTTCTTGTTCGCGCCGGAAACAAAG 2372 | || ||||||||| ||||| ||||||| || || | | ||| ||||| ||||||| | Sbjct 774 GTCCGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTG 833 Query 2373 ATCTTATCGGTCACGCTGAAACAAACATCCGTGAACAGTTACGCGCTCAAGGTGTCATGT 2432 | || | | |||| ||| |||| | ||| || | ||||| || |||| || |||| Sbjct 834 ACGTTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGT 893 Query 2433 AA 2434 || Sbjct 894 AA 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17729790690890