Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_007817.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq252 1379 0.0 >seq252 Length=3317 Score = 1379 bits (1528), Expect = 0.0 Identities = 1727/2349 (74%), Gaps = 86/2349 (4%) Strand=Plus/Plus Query 900 ATGATTCATCTTCGGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGCACCCAGC--A 957 |||||||| | ||||||||||||||||||||||||||||||||||| | |||| | Sbjct 970 ATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTA--CAGCTAA 1027 Query 958 CGGCCGTTTACATTTTCACGCAGTGCACCTTATGCGCACACTTCCTCTGGGTTCTATCGA 1017 |||||| | ||||| || || |||||| ||||||| ||||||||| ||| | || Sbjct 1028 TGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGA 1087 Query 1018 CCCTAACTTTGGCAAGCTGGTGCGTACTAATCGGCAAATAAATAGCTTGCAAAATACATG 1077 |||||| ||||| | ||| || | | || || ||||||||||||||||||| || Sbjct 1088 CCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTG 1147 Query 1078 GCCCTATGGTTACTCTATGCCCATCGCGGTCCGGTACTCCCAAGACGCATTTTCGCGCGC 1137 ||| ||||||||| |||||||||||| || || ||| | || ||||| ||||| || | Sbjct 1148 GCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTC 1207 Query 1138 TGGCTGGCTCTGGCCCGTTGATACAAAGGGCGAACCTCTTAAAGCTACCTCGTATATGGC 1197 ||| ||| | ||||| |||||| | || || || || |||||||||||| |||||||| Sbjct 1208 TGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGC 1267 Query 1198 TGTCGGCTTCTACGTCGCTAAATACGTTAACAAAAAATCAGATATTGACATGGCCTCTAA 1257 ||| || ||||| || |||||||||||||||||||| |||||||| ||| | || |||| Sbjct 1268 TGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAA 1327 Query 1258 AGGTCTAGGGAATAAAGAATGGAACAATTCACTCAAAACCAAAATCAACCTGCTGCCCAA 1317 ||||||||| ||||||||||||||| ||||| |||||||| | || || ||||| Sbjct 1328 AGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAA 1387 Query 1318 GAAAATTTTTCGCATCAGGATGTCTCGCAACTTCGGAATGAAGCTGCACACAATGAGTCA 1377 ||| | || | ||||| ||| ||||||||||| ||||| ||| |||||||| | Sbjct 1388 GAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAA 1447 Query 1378 CCTCTCAGCGGAAACTCTAATCCAACTGACCCAAGTGGGCTACGACGTGACCCCGTTCAA 1437 || || |||| |||||||||| ||| | |||| ||||||| ||| |||||||| Sbjct 1448 TCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAA 1507 Query 1438 CAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACGATTGAGGCTGGCAAAGAAATCTGT 1497 | | || |||||||||||||| || | |||| | |||||||||||| ||| |||| Sbjct 1508 CCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGT 1567 Query 1498 CGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAATCTGCTAAAATTCATGCGCAATTT 1557 ||||||||||||| |||||||||||||||||| |||||||| ||||| |||||| || Sbjct 1568 AGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTC 1627 Query 1558 GACCCGTCAA----ATCGGAGTGTCCAACCTGCAGAGTTTTATCGCTTCAATGACAACGA 1613 || | || || || || |||||||||||||||||||||||||| ||||| || Sbjct 1628 GA----TAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGA 1683 Query 1614 AATTAACAAGTATGGATATTTCTGATGAAACCAAAAACTACGTTGATACTGCAGGAATTA 1673 | |||||| | ||||||||||||||| | ||||| || |||||| |||||||||| Sbjct 1684 AGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTA 1743 Query 1674 CTGCTACTCACTTACGAATTAAATCGAAGTGGACTGCTGGTGGAAAATGAAGAAATTCAA 1733 || || || ||||||||||||||||||||||||||||| ||||||||| |||||| | Sbjct 1744 CTACTGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGA 1803 Query 1734 TCTGAACTTAAAAAATTCGAGAAGCTCTTACTTCGCCACCTTTCGCCATCACCTGAACG- 1792 || ||| | ||||||||||||||||| || |||||||||||||| || |||| Sbjct 1804 CCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACGA 1862 Query 1793 TACTGGCAAAGACTGACGCTCTCGACGAGGAAAAATACCTAAATATGCTAGGTGCTCTCC 1852 | ||| |||| |||||||| | || ||||| || | || |||||||| || | || Sbjct 1863 TTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCG 1922 Query 1853 TCAAGGACTGGTTCCGTTACGAAGAACATTTCGTACATGGTAAACAATCAATGCTTGACT 1912 ||||||||||||| | || || |||||| || ||||||| | | || | ||||| Sbjct 1923 TCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACA 1982 Query 1913 TATTAAATGAACGTGGACTATTATC-----CACA---TCAACAACCAACCCAAAAGGAAA 1964 | ||||| || |||||| || |||| | | | |||||| | || ||| || Sbjct 1983 TTTTAAAAGAGCGTGGATTACTATCTGAGTCCGATGCTGTTCAACCA--CTAATAGGTAA 2040 Query 1965 TACAAAATGA---ACTCTAACGAATCTGCTGTTGCCTTCGCTACTGCTCTCGCATCTATC 2021 | | |||| | || ||| | || ||| || ||| | || ||||| Sbjct 2041 GAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATT 2100 Query 2022 AAGCTCATTCAGGCTTCATCTGTGCTGGACCTGACCGAAGACGACTTCGATTTCTTAACC 2081 ||||||||||||||||| | || |||| | |||||||| || |||||||| | || Sbjct 2101 AAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACG 2160 Query 2082 CGTGACCGTGTATGGATTGCCACTGACCGCTCCCGTGCTCGCCGCGCTATTGAGGCCTGC 2141 || || || |||||||| ||||||||||| |||||||| ||| |||||||| ||| Sbjct 2161 AGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCATTGAGGCTTGC 2220 Query 2142 GTATATGGTACATTGGACTTTGTCGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATT 2201 || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2221 GTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATT 2280 Query 2202 GCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATCCAGACAGCATGTCTTATTATG 2261 |||||||||||||||||||||||||||||||| ||||| || || || ||||| || ||| Sbjct 2281 GCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATG 2340 Query 2262 GAAGGCGCCGAGTTCACCGAAAATATTATCAATGGTATTGACCAGCCAGTTAAGGCCGCT 2321 |||||||| || || || ||||| ||||| ||||| | || | || ||||| |||||| Sbjct 2341 GAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCT 2400 Query 2322 GAACTATTCGCTTTTACCCTGCGTGTACGCGCCGGAAACACTGACCATGTTACACATGCA 2381 ||| | ||||| |||||| ||||||||||||| |||||||||||| | | || | ||| Sbjct 2401 GAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTAACTGACGCA 2460 Query 2382 GAAACTAACGTACGTGAACAATTACGTGCTCAAGGAGTAATGTAATGGCTAAA------- 2434 ||| ||||| ||| || |||||||||| ||||||| |||||||| ||||| Sbjct 2461 GAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAA 2520 Query 2435 --------GGCTCTCG---TCGGCGTTC---GCCGTCCCG-----CT----------CTA 2465 ||| |||| | | ||| | ||||| || || || Sbjct 2521 AACGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTA 2580 Query 2466 AAGGTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAATCTTCTAGGGGCTTCGGCC 2525 |||| ||||| || |||||||| || || |||||| ||| || ||||||||||||| Sbjct 2581 AAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAA--TTGCAGGGGCTTCGGCC 2638 Query 2526 CCTCTATTTAAGGATATAAAATGTCTAACGTTCAAACTTCCGCTGACCGCATTCCTAACG 2585 ||| || || |||||| | |||||||| |||||||| ||| || || || || | | Sbjct 2639 CCT-TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATG 2697 Query 2586 ACCTTTCTCACCTCGTCTTCGAGGCTGGTAAAATCGGCCGTTTAAAAACTATCTCCTGGA 2645 ||||||| || | | |||| |||||| | || || ||| | | || || || | Sbjct 2698 ACCTTTCCCATCCTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTA 2757 Query 2646 CTCCAGTTGTCGCTGGCGACTCATTTGAAACTGAGATGGTAGGCGCTATTCGCCTTTCTC 2705 |||| ||| ||||||||||||| || || | || || |||||| | || ||||||| Sbjct 2758 CTCCGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTC 2817 Query 2706 CACTCCGTCGCGGCCTTGCCGTCGACTCTCGCGTGGATATCTTCTCTTTCTATATTCCGC 2765 || | ||||| |||||||| | |||||| || || || || |||| ||| | || | Sbjct 2818 CATTGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTC 2877 Query 2766 ATCGTCATATCTATGGTCAAGAATTCATTGAATTCATGAAAGCTGGCGTTAATGCCACTC 2825 ||||||| | |||||| || | | ||| | |||||||| ||||| ||||||||||||| Sbjct 2878 ATCGTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGCTGGTGTTAATGCCACTC 2937 Query 2826 CTCTCGCACCTGTTACTACTGCCTCTGGCT---GGGATGCTTCTGCCTATCTTGGCACTA 2882 ||||| | |||||| |||| |||| | || | | || | ||||||||| | Sbjct 2938 CTCTCCCGACTGTTAACACTG---CTGGTTATATTGACCATGCCGCTTTTCTTGGCACGA 2994 Query 2883 TTCCATCCTCAAACC-TCAAGGTTCCTAAATTCTTACATCAAGGATACCTTAATATTTAC 2941 || | ||| | ||| || | ||||| || ||| || || | ||||| || Sbjct 2995 TT-AACCCTGATACCAATAAAATCCCTAAGCATTTGTTTCAGGGTTATTTGAATATCTAT 3053 Query 2942 AACAACTACTTTAAGCCACCGTGGGATG-CTGACCTTACATACGCTAACCCATCTAACAT 3000 |||||||| ||||| | |||| ||||| |||||| ||| | ||||||| |||| Sbjct 3054 AACAACTATTTTAAAGCGCCGT-GGATGCCTGACCGTACCGAGGCTAACC---CTAATGA 3109 Query 3001 GCCTGAACAGGATTA---TAAATGGGGCGTTCG-TGTCGCTAACTTAAAATCTATCTGGA 3056 || | | || ||| | | | || | || || || | || |||| | || |||| Sbjct 3110 GCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAAC-ATTTGGA 3168 Query 3057 CCGCCCCCTTACCTCCTAACTCTAAAACATC-AGAGACTATGACCACTGGCGCTACGTCT 3115 | || || | |||||| | || | || || | ||||| ||| | || ||| Sbjct 3169 CTGCTCCGCTTCCTCCTGAGACTGAGCTTTCTCGACA-AATGACGACTTCTACCACATCT 3227 Query 3116 ATTGATATTATGGGCCTGCAAGCTGCTTATGCTAAATTGCACACCCAACAAGAACGTGAC 3175 ||||| |||||||| |||||||||||||||||||| ||||| || | ||||||||||| Sbjct 3228 ATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGAT 3287 Query 3176 TACTTCATG 3184 ||||||||| Sbjct 3288 TACTTCATG 3296 Score = 643 bits (712), Expect = 0.0 Identities = 673/881 (76%), Gaps = 15/881 (2%) Strand=Plus/Plus Query 1568 ATCGGAGTGTCCAACCTGCAGAGTTTTATCGCTTCAATGACAACGAAATTAACAAGTATG 1627 || || || |||||||||||||||||||||||||| ||||| ||| |||||| | | Sbjct 28 ATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTTAACACTTTCG 87 Query 1628 GATATTTCTGATGAAACCAAAAACTACGTTGATACTGCAGGAATTACTGCTACTCACTTA 1687 |||||||||||||| | ||||| || |||||| |||||||||||| || || ||| Sbjct 88 GATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTACTGCTTGTTTA 147 Query 1688 CGAATTAAATCGAAGTGGACTGCTGGTGGAAAATGAAGAAATTCAATCTGAACTTAAAAA 1747 |||| ||||||||||||||||||||| ||||||||| |||||| | || ||| | Sbjct 148 CGAACTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTATCCTTGCGCA 207 Query 1748 ATTCGAGAAGCTCTTACTTCGCCACCTTTCGCCATCACCTGAACG-TACTGGCAAAGACT 1806 ||||||||||||||||| || |||||||||||||| || |||| | ||| |||| ||| Sbjct 208 GCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCTGTCAAAAACT 266 Query 1807 GACGCTCTCGACGAGGAAAAATACCTAAATATGCTAGGTGCTCTCCTCAAGGACTGGTTC 1866 ||||| | || ||||| || | || |||||||| || | || ||||||||||||| Sbjct 267 GACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAAGGACTGGTTT 326 Query 1867 CGTTACGAAGAACATTTCGTACATGGTAAACAATCAATGCTTGACTTATTAAATGAACGT 1926 | || || |||||| || ||||||| | | || | || || | ||||| || ||| Sbjct 327 AGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTTACATTTTAAAAGAGCGT 386 Query 1927 GGACTATTATCCACATCAA--------CAACCAACCCAAAAGGAAATACAAAATGA---A 1975 ||| || |||| || |||||| | || ||| || | | |||| | Sbjct 387 GGATTACTATCTGAGTCCGATGCTGTTCAACCA--CTAATAGGTAAGAAATCATGAGTCA 444 Query 1976 CTCTAACGAATCTGCTGTTGCCTTCGCTACTGCTCTCGCATCTATCAAGCTCATTCAGGC 2035 || ||| | || ||| || ||| | || ||||| |||||||||||||| Sbjct 445 AGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAGCTCATTCAGGC 504 Query 2036 TTCATCTGTGCTGGACCTGACCGAAGACGACTTCGATTTCTTAACCCGTGACCGTGTATG 2095 ||| | || |||| | |||||||| || |||||||| | || || || || || Sbjct 505 TTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACAAAGTTTG 564 Query 2096 GATTGCCACTGACCGCTCCCGTGCTCGCCGCGCTATTGAGGCCTGCGTATATGGTACATT 2155 |||||| ||||||||||| |||||||| ||| ||||||| ||||| |||||||| | Sbjct 565 GATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATGGTACGCT 624 Query 2156 GGACTTTGTCGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGC 2215 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 625 GGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCGTCATTGC 684 Query 2216 TTATTATGTTCATCCCGTTAACATCCAGACAGCATGTCTTATTATGGAAGGCGCCGAGTT 2275 |||||||||||||||||| ||||| || || || ||||| || ||||||||||| || || Sbjct 685 TTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCGCTGAATT 744 Query 2276 CACCGAAAATATTATCAATGGTATTGACCAGCCAGTTAAGGCCGCTGAACTATTCGCTTT 2335 || ||||| ||||| ||||| | || | || ||||| ||||||||| | ||||| || Sbjct 745 TACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGTTCGCGTT 804 Query 2336 TACCCTGCGTGTACGCGCCGGAAACACTGACCATGTTACACATGCAGAAACTAACGTACG 2395 |||| ||||||||||||| |||||||||||| | |||| | |||||| ||||| || Sbjct 805 TACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGACGCAGAAGAAAACGTGCG 864 Query 2396 TGAACAATTACGTGCTCAAGGAGTAATGTAATGGCTAAAGG 2436 | || |||||||||| ||||||| |||||||| ||||||| Sbjct 865 TCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGG 905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17438666376045