Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_007821.1 Length=6068 Score E Sequences producing significant alignments: (Bits) Value seq252 693 0.0 >seq252 Length=3317 Score = 693 bits (768), Expect = 0.0 Identities = 890/1224 (73%), Gaps = 70/1224 (6%) Strand=Plus/Plus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 2108 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 2167 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| |||||||||| ||||||| Sbjct 2168 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCATTGAGGCTTGCGTTTATG 2227 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2228 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2287 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 2288 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 2347 Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCT 2880 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 2348 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 2407 Query 2881 TCGCGTACACCTTGCGTGTTAAGGCCGGATTCAAAGAAACGGTTCTGA---GCGCTGAAG 2937 |||||| ||||||||||| || ||| || || ||||| | ||| |||| Sbjct 2408 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGA---CGTTCTAACTGACGCAGAAG 2464 Query 2938 AGAATGCTCGTCAGAAACTTCGTGCA-----AGTGGAGTAATGT---AATATGAAGAAAG 2989 | || | ||||| ||| | |||||| |||| ||||||| || | || || | Sbjct 2465 AAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAACG 2524 Query 2990 CTC-GTCGTTC-CCCTTCTCGT----------------------AAG--------AAAGG 3017 || | || || |||| |||| ||| ||||| Sbjct 2525 TTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGG 2584 Query 3018 CGCTCGTCTCTGGTATGTAGGCGGTTCTCAATTTTAATTAACGGGGCTTCGGCCCCT--- 3074 ||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||| Sbjct 2585 CGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGCAGGGGCTTCGGCCCCTTAC 2644 Query 3075 ATAAGGATTCTTAAATGTCAAACGTGCAAACTTCCGCTGAACGTATTCCTCACGACCTTT 3134 | ||||| | ||||| || | |||||| ||| || ||||| || || ||||||| Sbjct 2645 TTGAGGATAAAT-TATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACCTTT 2703 Query 3135 CTCATCTGGTTTTTGATGCAGGCAAAATTGGTCGTTTAAAGGTTGTTTCTTGGACTCCTG 3194 | |||| | || ||| || | ||||||||| | | |||| ||||| | Sbjct 2704 CCCATCCTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTCCGG 2763 Query 3195 TTGTTGCAGGTGATTCTTTTGAGCTTGATATGATTGGCGCTATTCGCCTTTCCCCGCTTC 3254 || | || || || || || ||| | || |||||||| | || ||||| || | | Sbjct 2764 TTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCATTGC 2823 Query 3255 GTCGTGGCCTTGCTGTTGACTCTCGTGTTGACCTGTTCACGTTTTATGTCCCTCATCGTC 3314 |||||||||||||| |||||||| ||| ||| | || || ||||||||||||||||||| Sbjct 2824 GTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATCGTC 2883 Query 3315 ATGTATATGGTGAGCAGTGGATTGATTTTATGAAGCAAGGTGTTGATGCTGCTCCTTTGG 3374 | || |||||||| ||||||||| | || |||||| |||||| |||| ||||| | Sbjct 2884 ACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGCTGGTGTTAATGCCACTCCTCTCC 2943 Query 3375 CCCCTGTT--CAGTGCTCTCGCGGTTGGGATAGTGCTCA------GTATCTTGCTACTAT 3426 | ||||| || |||| |||| ||| || || | ||||| || || Sbjct 2944 CGACTGTTAACACTGCT-----GGTT---ATATTGACCATGCCGCTTTTCTTGGCACGAT 2995 Query 3427 TCCGTCTAGTAACTTAAAGGTTCCTAAG--TTTCTTCATCAAGGTTACCTGAACATTTAC 3484 | || || | || | |||||| ||| || ||| ||||| |||| || || Sbjct 2996 TAACCCTGATACCAATAAAATCCCTAAGCATTTGTT--TCAGGGTTATTTGAATATCTAT 3053 Query 3485 AATAATTACTTTAAAGCTCCGTGGATGGATGACCTGACTTATGCCAACCCGTCTAATATG 3544 || || || |||||||| ||||||||| ||||| || | || ||||| | | | Sbjct 3054 AACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACCCTAATGAGCTT 3113 Query 3545 GAGGGTGAAGATGTTCGTTTTGGTGTTCGTGCATGTAACTTGAAAACTATTTGGACTGCT 3604 | || |||| ||||| |||| | ||| || | | |||| |||||||||||| Sbjct 3114 AATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCT 3173 Query 3605 CCGCTTCCTCCGGATACTGAAACCTCTCATTCTATGGAGACTGAAACCAACTCCATTGAC 3664 ||||||||||| || ||||| |||| ||| |||| |||| || |||||| Sbjct 3174 CCGCTTCCTCCTGAGACTGAGCTTTCTCGACAAATGACGACTTCTACCACATCTATTGAC 3233 Query 3665 ATTATGGGTTTGCAGGCCGCTTATGCTCAATTACATACTGAGCAGGAGCGTGATTACTTC 3724 ||||||||| |||| || ||||||||| | || |||||||| || || |||||||||||| Sbjct 3234 ATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGAACGTGATTACTTC 3293 Query 3725 ATGACTCGTTATCGTGATATTGTT 3748 ||| ||||| | |||| || || Sbjct 3294 ATGCAGCGTTACCATGATGTTATT 3317 Score = 444 bits (492), Expect = 2e-121 Identities = 340/400 (85%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 2581 TTCAGGCTTCCGCTGTTCTGGATATTACCGAGGAGGATTTTGATTTCCTGACTGGTGATA 2640 |||||||||| || ||| ||||| | ||||| || ||||| ||||| ||||| || | | Sbjct 498 TTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGTAACA 557 Query 2641 AAATTTGGATTGCTACTGACCGCAACCGTGCGCGTCGCTGTGTTGAGGCTTGTGTTTATG 2700 || |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||| Sbjct 558 AAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCGTTGAGGCTTGCGTTTATG 617 Query 2701 GAACACTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 2760 | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 618 GTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCTGCCG 677 Query 2761 TCATTGCTTATTATGTTCATCCCGTCAACATTCAGACGGCCTGCCTCATCATGGAAGGCG 2820 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 678 TCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAAGGCG 737 Query 2821 CTGAGTTTACGGAAAACATTGTTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAGCTCT 2880 |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | | Sbjct 738 CTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAATTGT 797 Query 2881 TCGCGTACACCTTGCGTGTTAAGGCCGGATTCAAAGAAACGGTT-CTGAGCGCTGAAGAG 2939 |||||| ||||||||||| || ||| || || || |||| ||| ||||| Sbjct 798 TCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTTACTGA-CGCAGAAGAA 856 Query 2940 AATGCTCGTCAGAAACTTCGTGCAAGTGGAGTAATGTAAT 2979 || | ||||| ||| | |||||| ||||| ||||||| Sbjct 857 AACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 896 Score = 114 bits (126), Expect = 5e-22 Identities = 193/275 (70%), Gaps = 6/275 (2%) Strand=Plus/Plus Query 1416 GGTCGTTCGGTTAAGGATTCCTACAACGATTGCTATCGCTATCTTTGTGTGCCGGAGTTT 1475 ||||| || ||| ||||| || ||| ||||||| ||| |||||||||| |||| | Sbjct 957 GGTCGCAAGGCTAATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTAT 1016 Query 1476 GGAGGTCAGC--ACGGTCGTCTTCATTGGCATGTTGTGCATATGGTGCGGACTCTTCCTT 1533 || |||| | || |||||||||| |||| ||||| | ||||||| |||||| Sbjct 1017 GGTA--CAGCTAATGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTA 1074 Query 1534 TGGGAAGTTACGACCCTAATTTCGGTCGCAAGGTACGTAATTATCGCCAGATTAACTCG- 1592 || || ||||||||||| ||||| |||||| ||| |||||| |||| | | Sbjct 1075 CAGGTAGCGTTGACCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAG-TTAAATAGC 1133 Query 1593 TTCCGTGGCATGTGGCCTTATGGCTTCACGCAACCGATAGCTGTACGCTATCAACATGAT 1652 || | | |||||||||||| | || || || || || ||||| || || Sbjct 1134 TTGCAAAATACGTGGCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGAC 1193 Query 1653 GCTTATTCTCGCAAAGGTTGGTTGTGGCCTGTTGA 1687 |||| ||| || |||||||||||||||||||| Sbjct 1194 GCTTTTTCACGTTCTGGTTGGTTGTGGCCTGTTGA 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 19297239817024