Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clunio_20marinus_20[genbank_20GCA_5F900005825.1_202016-11-28] 23,763 sequences; 85,491,412 total letters Query= NC_007856.1 Length=5486 Score E Sequences producing significant alignments: (Bits) Value seq252 1382 0.0 >seq252 Length=3317 Score = 1382 bits (1532), Expect = 0.0 Identities = 1743/2376 (73%), Gaps = 96/2376 (4%) Strand=Plus/Plus Query 906 ATGATTCATCTTCGGACTGCTATCAGTACTTTTGTGTGCCTGAGTATGGCACCCAGC--A 963 |||||||| | |||||||||||||| |||||||||||||||||||| | |||| | Sbjct 970 ATGATTCACACGCCGACTGCTATCAGTATTTTTGTGTGCCTGAGTATGGTA--CAGCTAA 1027 Query 964 TGGCCGTTTACACTTTCACGCAGTGCATCTTATGCGCACACTTCCTTTGGGTTCTCTCGA 1023 ||||||| | || || || || ||||| ||||||| ||||||||| ||| | || Sbjct 1028 TGGCCGTCTTCATTTCCATGCGGTGCACTTTATGCGGACACTTCCTACAGGTAGCGTTGA 1087 Query 1024 CCCTAACTTTGGTAAGCTGGTGCGTACTAATCGGCAAATAAATAGCTTGCAAAACACATG 1083 |||||| |||||| | ||| || | | || || |||||||||||||||| || || Sbjct 1088 CCCTAATTTTGGTCGTCGGGTACGCAATCGCCGCCAGTTAAATAGCTTGCAAAATACGTG 1147 Query 1084 GCCTTATGGTTACTCTATGCCCATCGCAGTCCGGTATTCTCAGGATGCTTTCTCTCGCGC 1143 ||||||||||||| ||||||||||||||| || || | ||||| ||||| || || | Sbjct 1148 GCCTTATGGTTACAGTATGCCCATCGCAGTTCGCTACACGCAGGACGCTTTTTCACGTTC 1207 Query 1144 TGGATGGCTCTGGCCTGTCGATACAAAGGGTGAACCCCTTAAATCCACCTCGTATATGGC 1203 ||| ||| | |||||||| ||| | || ||||| || |||||| | ||| |||||||| Sbjct 1208 TGGTTGGTTGTGGCCTGTTGATGCTAAAGGTGAGCCGCTTAAAGCTACCAGTTATATGGC 1267 Query 1204 TGTAGGCTTCTACGTTGCTAAATACGTTAATAAAAAATCTGATGTTGACATAGCCGCAAA 1263 ||| || ||||| || |||||||||||||| ||||| || ||| | ||| | || || || Sbjct 1268 TGTTGGTTTCTATGTGGCTAAATACGTTAACAAAAAGTCAGATATGGACCTTGCTGCTAA 1327 Query 1264 AGGCTTAGGGAATCAAAAATGGAACGCTACATTAAAAACGCAGATGGCTCTTTTACCAAA 1323 ||| |||| | || |||||||| || ||||||| || || | || | || || Sbjct 1328 AGGTCTAGGAGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTTCCCAA 1387 Query 1324 GAAACTATTTCGAATTCGAATGAGCCGCAACTTCGGGATGAAACTACTCCCAATGACGAC 1383 ||| || || |||| |||||||||||||||||||||||||| | ||| ||||||| | Sbjct 1388 GAAGCTGTTCAGAATCAGAATGAGCCGCAACTTCGGGATGAAAATGCTCACAATGACAAA 1447 Query 1384 GCTGACCGCGGAGTGTTTAATCCAACTGACCCAAGTGGGTTACGACGTGACCCCGTTCAA 1443 ||| || ||||||| ||||||||||| ||| | |||||||||||| ||| |||||||| Sbjct 1448 TCTGTCCACGGAGTGCTTAATCCAACTTACCAAGCTGGGTTACGACGCGACGCCGTTCAA 1507 Query 1444 CAACATCTTGAAGCAGAACGCCAAGAAAGAGCTACGATTGAGGCTGGCAAAGCAATCTGT 1503 | | || |||||||||||||| || | |||| | |||||||||||| ||| |||| Sbjct 1508 CCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCTGGGAAAAGTTACTGT 1567 Query 1504 AGCCGACGTTTTGGAGGCGCAACCTGTGACGACCAATCTGCTAAAATTCATGCGCAATTT 1563 |||||||||||||| |||||||||||||||||| |||||||| ||||| |||||| || Sbjct 1568 AGCCGACGTTTTGGCGGCGCAACCTGTGACGACAAATCTGCTCAAATTTATGCGCGCTTC 1627 Query 1564 GACCCGAACAATCGGAGCGTCCAGCCTACAGAGTTTTATCGCTTCAATGACGCAGAAATT 1623 || || || || | |||| ||| ||||||||||||||||| ||||||||||| || Sbjct 1628 GATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCTTCCATGACGCAGAAGTT 1687 Query 1624 AGCAAATACGGATATTTCTGATGAAACTAAAAACTACGTTACTAATGCAGGAATTGCTGT 1683 | || | |||||||||||||||| | ||||| || || ||| ||||||||| || Sbjct 1688 AACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGATAAAGCAGGAATTACTAC 1747 Query 1684 TGCTGACTTACGACTTAAATCGAAGTGGACTGCTGGTGGAAAATGAAGAACTTCAATCTC 1743 |||| |||||| |||||||||||||||||||||| ||||||||| || ||| | || Sbjct 1748 TGCTTGTTTACGAATTAAATCGAAGTGGACTGCTGGCGGAAAATGAGAAAATTCGACCTA 1807 Query 1744 AACTTAAAGAACTCGAGGGCGTCTTACTTCGCAACCTTTCGCCATCATCTCAACG-TGGT 1802 ||| | |||||| |||||||| || |||||||||||||| || |||| | | Sbjct 1808 TCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCCATCAACT-AACGATTCT 1866 Query 1803 AGCAAAGACTGACGCGCTTGATGAAGAAAAATGGCTCAATATGATGGGCGCTCTTCTTAA 1862 |||| ||||||||| | ||||| || || ||||| |||||| | ||| | | | || Sbjct 1867 GTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATGCTTGGCACGTTCGTCAA 1926 Query 1863 GGACTGGTTCCGCTATGAACAACATTTCGTACATGGCAAAGAATCAATGCTTGACATTCT 1922 ||||||||| | ||||| |||||| || ||||| | ||| || | |||||||| | Sbjct 1927 GGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGATTCTCTTGTTGACATTTT 1986 Query 1923 AAATGAACGTGGCCTATTATCCACCTTGCCAAATG--GCTTAAC--TTACAAAGGAATCA 1978 ||| || ||||| || ||| | | | ||| | | ||| || | | || | Sbjct 1987 AAAAGAGCGTGGATTACTAT---CTGAGTCCGATGCTGTTCAACCACTAATAGGTAAGAA 2043 Query 1979 AAAATGA---AAGCAAATGAGAACGCAGTAGCCTTTCAAACCGCTATTGCCTCCATCAAA 2035 | |||| ||| | ||| | | ||| || || |||||| | ||||| || || Sbjct 2044 ATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCGCTTTGGCCTCTATTAAG 2103 Query 2036 CTTATTCAGGCATCTTCTGTTCTTGACCTGACTGAGGACGATTTCGAATTCTTAACTCGT 2095 || |||||||| ||| | ||| | || | || || || |||||||| || | || || Sbjct 2104 CTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATTTCGATTTTCTGACGAGT 2163 Query 2096 GACCGTGTATGGATTGCAACTGACCGCTCCCGTGCTCGCCGCGCTATTGAGGCTTGCGTT 2155 || || |||||||| ||||||||||| |||||||| ||| ||||||||||||||| Sbjct 2164 AACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCTGCATTGAGGCTTGCGTT 2223 Query 2156 TATGGAACTCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTCCTATTGAGTTTATTGCT 2215 ||||| || ||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 2224 TATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTCCTGTTGAGTTTATTGCT 2283 Query 2216 GCCGTCATTGCTTATTATGTTCATCCCGTTAACATTCAAACGGCATGTCTTATTATGGAA 2275 ||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||| Sbjct 2284 GCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGGCCTGTCTCATCATGGAA 2343 Query 2276 GGCGCTGAATTCACCGAAAACATCATTAATGGTGTCGATGCCCCGGTTAAAGCCGCTGAA 2335 ||||||||||| || |||||||| |||||||| ||||| |||||||||||||||||| Sbjct 2344 GGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTCCGGTTAAAGCCGCTGAA 2403 Query 2336 CTCTTCGCGTTTACCTTGCGTGTACGCGCCGGAAACACTGAGCTTATTACTTACGCAGAA 2395 | |||||||||||||||||||||||||| ||||||||||| || | ||| |||||||| Sbjct 2404 TTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACGTTCTAACTGACGCAGAA 2463 Query 2396 AACAATGCGCGTGAAAAACTGCGCGCTCAAGGAGTGATG-GATGTC------TAAAAAAT 2448 | || | |||| ||||| | || || ||||||||||| ||||| ||||||| Sbjct 2464 GAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGTAAAAAAC 2523 Query 2449 CTATTCGC---CGCTCTGGT---------------------------GGCAAATCTAAAG 2478 | | || ||| ||||| ||||| ||||| Sbjct 2524 GTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAG 2583 Query 2479 GTGCTCGCCTCTGGTATGTTGGCGGCACACAATTCTAATCTCTAAGGGGCTTCGGCCCCT 2538 | ||||| || |||||||| || || |||||| |||| | |||||||||||||||| Sbjct 2584 GCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTGC--AGGGGCTTCGGCCCCT 2641 Query 2539 CTATTTAAGGATACAAAATGTCTAACGTACAAACTTCCGCTGAACGTATTCCGCATGACC 2598 || || |||||| | |||||||| | |||||| ||| || ||||| |||||||||| Sbjct 2642 -TACTTGAGGATAAATTATGTCTAATATTCAAACTGGCGCCGAGCGTATGCCGCATGACC 2700 Query 2599 TCTCACATCTGGTATTCGAAGCTGGTAAAATCGGACGCCTTAAAACTATCTCCTGGACTC 2658 | || |||| | ||| |||||| | || || || |||| || || || |||| Sbjct 2701 TTTCCCATCCTGGCTTCCTTGCTGGTCAGATTGGTCGTCTTATTACCATTTCAACTACTC 2760 Query 2659 CTGTTGTCGCTGGTGATTCTTACGAAACTGAAATGGTAGGCGCTATTCGTCTTTCTCCTC 2718 | ||| ||||||| || || | ||| | || || |||||| | ||||||||||| Sbjct 2761 CGGTTATCGCTGGCGACTCCTTCGAGATGGACGCCGTTGGCGCTCTCCGTCTTTCTCCAT 2820 Query 2719 TCCGTCGTGGTCTGGCTGTCGACTCTCGCGTCGACGTCTTTACTTTCTATATCCCTCATC 2778 | |||||||| || ||| | |||||| || ||| | |||||||| ||| ||||||||| Sbjct 2821 TGCGTCGTGGCCTTGCTATTGACTCTACTGTAGACATTTTTACTTTTTATGTCCCTCATC 2880 Query 2779 GTCATGTCTATGGTCAACAATGGATTGACTTTATGAAGACTGGCGTTAACGCTACTCCTC 2838 |||| || |||||| |||| |||||| | || |||||| |||| ||||| || ||||||| Sbjct 2881 GTCACGTTTATGGTGAACAGTGGATTAAGTTCATGAAGGCTGGTGTTAATGCCACTCCTC 2940 Query 2839 TGGCTCCGGTAACTTGTTCCTCTGGCTGG-------GATTCTGCTGCCTATCTTGGCAC- 2890 | ||| ||| | | || ||||| || ||| || | ||||||||| Sbjct 2941 T---CCCG---ACTGTTAACACT-GCTGGTTATATTGACCATGCCGCTTTTCTTGGCACG 2993 Query 2891 --TATCCCGTCAACTAATTTGAAGGTTCCTAA--ATTCCTTCATCAATCTTATCTCAATA 2946 || ||| || ||| || | ||||| ||| || ||| |||| | |||| Sbjct 2994 ATTAACCCTGATACCAAT---AAAATCCCTAAGCATTTGTT--TCAGGGTTATTTGAATA 3048 Query 2947 TTTACAACAACTACTTTAAGCCGCCGTGGTCTAATGACCTCACCTATGCTAACCCATCTA 3006 | || |||||||| ||||| |||||||| ||||| ||| | ||||||| ||| Sbjct 3049 TCTATAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACC---CTA 3105 Query 3007 ATATGCCCGCTGAGGAT--TACAAATGGGGCGTTC--GTGTCGCTAACTTAAAATCTATC 3062 || || | | ||| | | | | ||| || || | || |||| | || Sbjct 3106 ATGAGCTTAATCAAGATGATGCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAAC-ATT 3164 Query 3063 TGGACCGCGCCCCTTCCTCCTGATTCATTAAC-TAAGCAGGATATGACTACTGGCGCTAC 3121 ||||| || || ||||||||||| | | | | | | | ||||| ||| |||| Sbjct 3165 TGGACTGCTCCGCTTCCTCCTGAGAC-TGAGCTTTCTCGACAAATGACGACT---TCTAC 3220 Query 3122 CA---CTATCGATATTATGGGCCTACAAGCTGCCTATGCTAAACTCCACACTGAACAGGA 3178 || |||| || |||||||| || |||||||| |||||||| | || ||||| || || Sbjct 3221 CACATCTATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACCAAGA 3280 Query 3179 ACGTGACTATTTCATGACTCGCTACCGCGATATTAT 3214 |||||| || |||||| || |||| ||| |||| Sbjct 3281 ACGTGATTACTTCATGCAGCGTTACCATGATGTTAT 3316 Score = 655 bits (726), Expect = 0.0 Identities = 695/907 (77%), Gaps = 13/907 (1%) Strand=Plus/Plus Query 1547 AAATTCATGCGCAATTTGACCCGAACAATCGGAGCGTCCAGCCTACAGAGTTTTATCGCT 1606 ||||| |||||| || || || || || | |||| ||| ||||||||||||||| Sbjct 1 AAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACCTGCAGAGTTTTATCGCT 60 Query 1607 TCAATGACGCAGAAATTAGCAAATACGGATATTTCTGATGAAACTAAAAACTACGTTACT 1666 || ||||||||||| ||| || | |||||||||||||||| | ||||| || || | Sbjct 61 TCCATGACGCAGAAGTTAACACTTTCGGATATTTCTGATGAGTCGAAAAATTATCTTGAT 120 Query 1667 AATGCAGGAATTGCTGTTGCTGACTTACGACTTAAATCGAAGTGGACTGCTGGTGGAAAA 1726 || ||||||||| || |||| |||||| ||||||||||||||||||||| |||||| Sbjct 121 AAAGCAGGAATTACTACTGCTTGTTTACGAACTAAATCGAAGTGGACTGCTGGCGGAAAA 180 Query 1727 TGAAGAACTTCAATCTCAACTTAAAGAACTCGAGGGCGTCTTACTTCGCAACCTTTCGCC 1786 ||| || ||| | || ||| | |||||| |||||||| || |||||||||| Sbjct 181 TGAGAAAATTCGACCTATCCTTGCGCAGCTCGAGAAGCTCTTACTTTGCGACCTTTCGCC 240 Query 1787 ATCATCTCAACG-TGGTAGCAAAGACTGACGCGCTTGATGAAGAAAAATGGCTCAATATG 1845 |||| || |||| | | |||| ||||||||| | ||||| || || ||||| |||||| Sbjct 241 ATCAACT-AACGATTCTGTCAAAAACTGACGCGTTGGATGAGGAGAAGTGGCTTAATATG 299 Query 1846 ATGGGCGCTCTTCTTAAGGACTGGTTCCGCTATGAACAACATTTCGTACATGGCAAAGAA 1905 | ||| | | | ||||||||||| | ||||| |||||| || ||||| | ||| Sbjct 300 CTTGGCACGTTCGTCAAGGACTGGTTTAGATATGAGTCACATTTTGTTCATGGTAGAGAT 359 Query 1906 TCAATGCTTGACATTCTAAATGAACGTGGCCTATTATCCACCTTGCCAAATG--GCTTAA 1963 || | || ||||| |||| || ||||| || |||| | | ||| | | || Sbjct 360 TCTCTTGTTTACATTTTAAAAGAGCGTGGATTACTATCTGAGT---CCGATGCTGTTCAA 416 Query 1964 CTTACAA-AGGAATCAAAA-ATGA---AAGCAAATGAGAACGCAGTAGCCTTTCAAACCG 2018 | || ||| | ||| |||| ||| | ||| | | ||| || || |||| Sbjct 417 CCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTACGTTTCCAGACCG 476 Query 2019 CTATTGCCTCCATCAAACTTATTCAGGCATCTTCTGTTCTTGACCTGACTGAGGACGATT 2078 || | ||||| || || || |||||||| ||| | ||| | || | || || || |||| Sbjct 477 CTTTGGCCTCTATTAAGCTCATTCAGGCTTCTGCCGTTTTGGATTTAACCGAAGATGATT 536 Query 2079 TCGAATTCTTAACTCGTGACCGTGTATGGATTGCAACTGACCGCTCCCGTGCTCGCCGCG 2138 |||| || | || || || || |||||||| ||||||||||| |||||||| ||| Sbjct 537 TCGATTTTCTGACGAGTAACAAAGTTTGGATTGCTACTGACCGCTCTCGTGCTCGTCGCT 596 Query 2139 CTATTGAGGCTTGCGTTTATGGAACTCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC 2198 ||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| Sbjct 597 GCGTTGAGGCTTGCGTTTATGGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC 656 Query 2199 CTATTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTTAACATTCAAACGG 2258 || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 657 CTGTTGAGTTTATTGCTGCCGTCATTGCTTATTATGTTCATCCCGTCAACATTCAAACGG 716 Query 2259 CATGTCTTATTATGGAAGGCGCTGAATTCACCGAAAACATCATTAATGGTGTCGATGCCC 2318 | ||||| || ||||||||||||||||| || |||||||| |||||||| ||||| | Sbjct 717 CCTGTCTCATCATGGAAGGCGCTGAATTTACGGAAAACATTATTAATGGCGTCGAGCGTC 776 Query 2319 CGGTTAAAGCCGCTGAACTCTTCGCGTTTACCTTGCGTGTACGCGCCGGAAACACTGAGC 2378 ||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| Sbjct 777 CGGTTAAAGCCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAACACTGACG 836 Query 2379 TTATTACTTACGCAGAAAACAATGCGCGTGAAAAACTGCGCGCTCAAGGAGTGATG-GAT 2437 || ||||| |||||||| | || | |||| ||||| | || || ||||||||||| || Sbjct 837 TTCTTACTGACGCAGAAGAAAACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAAT 896 Query 2438 GTCTAAA 2444 ||||||| Sbjct 897 GTCTAAA 903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17438666376045