Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_001270.2 Length=6825 Score E Sequences producing significant alignments: (Bits) Value seq15819 102 4e-18 seq209052 98.7 4e-17 >seq15819 Length=3629 Score = 102 bits (112), Expect = 4e-18 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1897 TGACGAATACCATATAAAAGTTGTAGTTGATATAATTTAGCGTGTCATATACAAAATGCG 1956 |||| | || |||| |||| |||||||||||||||||||||||||||||| ||||||| Sbjct 1869 TGACAAGCACAATATGAAAGCTGTAGTTGATATAATTTAGCGTGTCATATAAGAAATGCG 1928 Query 1957 GCGATTTGATTGGTAAATAATTTGCCTGGTATGAAA 1992 || |||||| | || |||||| | || ||||| ||| Sbjct 1929 GCAATTTGAATAGTTAATAATATCCCCGGTATAAAA 1964 >seq209052 Length=1370 Score = 98.7 bits (108), Expect = 4e-17 Identities = 191/280 (68%), Gaps = 29/280 (10%) Strand=Plus/Minus Query 5480 GCTTTTACTAACTGATTTATCGGTTTTTTAGGGTCACATATGTTATTAATTATTCCGTTA 5539 || ||||| | |||||| | ||||||||| || || | || |||||||| | Sbjct 1337 GCGTTTACAACTTGATTTTTAAATTTTTTAGGTTCGAATGCTATTTTGATTATTCCAATT 1278 Query 5540 GTTTTAATGTTTGTGGTTTTAGGAATTGAAACAATCAGAAAGTTAATTCACGGATATTAA 5599 || || |||||||||||||| || |||||||| || | |||||||||||||||||||| Sbjct 1277 GTATTGATGTTTGTGGTTTTGGGCATTGAAACTATTTGCAAGTTAATTCACGGATATTAG 1218 Query 5600 TATT--------TAATAATAAACTC-TAACCTTG--------ATTTTA-GTAGTTAACAT 5641 ||| || ||| || | | || | | |||||| ||| || | Sbjct 1217 AATTTTCTTACCTACTAAAAAGGGCGTTACTTAGAGAGGTGTATTTTATGTATTT----T 1162 Query 5642 TTAGGAAAGGAATAAGAAAAATGCAAAGTGTATGAGatttatattatgaatttatgacta 5701 ||| || | ||||| ||||||| |||||| | |||||||| ||| |||||| Sbjct 1161 TTAACAAGTGTTCCAGAAA-----AAAGTGTTTGAGATATGTATTATGATTTTTTGACTA 1107 Query 5702 ttatttttggagttaa--tcaccctattattttagatatt 5739 |||||||||| ||| | || ||| |||||| ||||| Sbjct 1106 TTATTTTTGGTGTTGATTTCCCCCAGTTATTTCTTATATT 1067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21673153279932