Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylostylus_20patibulatus_20[genbank_20GCA_5F001014875.1_202015- 05-28] 211,317 sequences; 451,941,653 total letters Query= NC_003793.1 Length=7768 Score E Sequences producing significant alignments: (Bits) Value seq15819 976 0.0 seq139757 268 5e-68 seq84797 237 8e-59 seq170189 84.2 1e-12 seq22225 84.2 1e-12 >seq15819 Length=3629 Score = 976 bits (1082), Expect = 0.0 Identities = 920/1165 (79%), Gaps = 27/1165 (2%) Strand=Plus/Plus Query 2230 TTTAATTTTAATGGTTCAATTTATTCATCATTAAATAGTAAAGATTTAAAGTATTATCAA 2289 ||||||||| |||| | | |||||| ||| | | | | || | || |||||| || Sbjct 1101 TTTAATTTTGATGGAAATACTAATTCATATTTAGAAAATGGAAATATTAAATATTATGAA 1160 Query 2290 CAGTTTAGTGGTCAGTTTGATTTATCTAAGTTTTTACAGTCGTTTTTTGCAAGTGCTTTG 2349 | | | || || ||||| | ||| |||||| | | |||||||| ||||||| Sbjct 1161 AAAATGAAAGGACAAATTGATATTAATAAATTTTTAAAAGCATTTTTTGCGTATGCTTTG 1220 Query 2350 GTGCCAGTGTTTCAAAATCGTAGTTCTTTTATTGAAAATGGATATATTGATAATTTACAA 2409 || || |||||||||||||| ||| ||||||||||| ||| ||||||||||||||||| Sbjct 1221 GTACCTGTGTTTCAAAATCGGAGTAATTTTATTGAAAGTGGTTATATTGATAATTTACAG 1280 Query 2410 TATGATACTGTTTTAGTTAACTTTTTTGCGTTGAAATTACAAAATTTTAATAATATTTT- 2468 ||||||||||||||| |||||||||||| || |||||| ||||||| || |||| Sbjct 1281 TATGATACTGTTTTAATTAACTTTTTTGGTTTAAAATTAGTTAATTTTATAGATGTTTTA 1340 Query 2469 GTTGAGTGAAAATATTAACGATAAATTACAATTTGATAAATTATTAAATAGTATGTTTAA 2528 |||| | |||||| || ||||| |||||||| || ||||||||||||||||||| Sbjct 1341 ATTGA-TAAAAATAATATTAATAAAAATCAATTTGAAAAGTTATTAAATAGTATGTTTAC 1399 Query 2529 GATTTCACAGAAATTTTATACTAATTATTTACGTACGATTTTTGATTTAGAAAATAATAC 2588 ||||||| || ||||||| |||||||||| || ||||||||||||||||||||||| Sbjct 1400 AGTTTCACAAAATTTTTATAGGGATTATTTACGAACCATTTTTGATTTAGAAAATAATAC 1459 Query 2589 TTATGTTCAAGGTTATAATAAAAAATATGGTTTGTTAGTAAATAATGGTTTTAAAATTTA 2648 |||||| ||||| |||||||||||||||||||| |||| ||||||||| ||||||||||| Sbjct 1460 TTATGTGCAAGGATATAATAAAAAATATGGTTTATTAGCAAATAATGGGTTTAAAATTTA 1519 Query 2649 CCCACGATATTTTTATTTTTCGGATAAATATAAGCAATTAGATATTAAATTATATTCAGC 2708 ||||||||||||||||||||| ||||||||||| |||||||| |||| | ||||| || Sbjct 1520 CCCACGATATTTTTATTTTTCCGATAAATATAATAAATTAGATTTTAAGATGTATTCTGC 1579 Query 2709 ATTTAAAAATCGGTTTTATACGATTAATAATTATGGTAGTGTTTTTAATTATGATTTTTC 2768 | |||||||||||||||| | | |||||||| ||| ||||| ||||||||||| Sbjct 1580 TTATAAAAATCGGTTTTAT---AACACAAATTATGGAGATGTATTTAACTATGATTTTTC 1636 Query 2769 GGTTGCTAATAATTATAATATTAGTTTAAATTCGGGTTATGTTTTTGGCGGTGATTTACA 2828 || | ||| |||||||||||| | |||| |||||||||||||| || | |||| | Sbjct 1637 AGTCTCAAATGATTATAATATTAATCAAAATGAGGGTTATGTTTTTGAAGGCGCTTTAAA 1696 Query 2829 AAATAAATATGGTTTGCAATATaaaaaaaTTGAAGAACAAAAAATCGGTTATAATGTTTT 2888 | ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || Sbjct 1697 AGATAAATATGGTTTAAAATATAAAAAAATGGAAGAACAAAAAATCGGTTATAATGTCTT 1756 Query 2889 TGAATTGCAAGCACAAAAAGAGAATGATATGTACCGATATTATGATTTTAATTTTGGGAT 2948 |||||| ||||| |||||||| ||||||||||| || |||||||||||||||||| | || Sbjct 1757 TGAATTACAAGCCCAAAAAGAAAATGATATGTATCGTTATTATGATTTTAATTTTAGTAT 1816 Query 2949 TTATAATTGACAAGAAATTAATAATGGTGGGTTGTTCCCCGATAAACAATGATGACAAGT 3008 |||||| ||||||||||||||||||||||| || || || |||| ||||||||||||| Sbjct 1817 TTATAACTGACAAGAAATTAATAATGGTGGTTTATTTCCTGATAGTCAATGATGACAAGC 1876 Query 3009 GCAATATATAACTCCTAAAGGTTGATGAGATTTTGGCG-CTCATATTAAAAATGCGGTGA 3067 |||||| || || |||||| | | ||| ||| |||||| | |||||||| | Sbjct 1877 ACAATATGAAAGCTGTA---GTTGAT-ATAATTTAGCGTGTCATATAAGAAATGCGGCAA 1932 Query 3068 TTTGAATTGTCAACACTATTCCTGGTGTTAAACAAGTTAATGAATTAGCGAGTGGTGTTG 3127 ||||||| || || | ||| || ||| | ||||||||||| |||||||| |||||||||| Sbjct 1933 TTTGAATAGTTAATAATATCCCCGGTATAAAACAAGTTAACGAATTAGCAAGTGGTGTTG 1992 Query 3128 GTAAGGTTTTTGAAACAGTATATAGtttttttAGTCAAATATTTGAGGTATGGAAAT--- 3184 | || | ||| ||||| | ||||||||||||| ||||| ||| || || || |||| Sbjct 1993 GAAAAATATTTCAAACAATTTATAGTTTTTTTAATCAAACATTCGAAGTGTGAAAATTTA 2052 Query 3185 ----TTAATCCAGCATTGTATAGTACAATAACAAATATCTTTTTATTAATTATTTTTATG 3240 ||| ||||||||| ||||| |||||||| ||| | || ||||||||||| |||||| Sbjct 2053 GTCNTTAGTCCAGCATTATATAGCACAATAACTAATTTATTCTTATTAATTATATTTATG 2112 Query 3241 AAATTTGTACGATTAATATaaaaaaaGGAACTGTTATTAATTAAGTTCCTTTTTGTTCTT 3300 |||||||| ||||||||||||||| || || ||||| | | || ||| ||| | Sbjct 2113 AAATTTGTGCGATTAATATAAAAATAG--AC--TTATTTAGT------CTATTTTTTCAT 2162 Query 3301 TTCAATCAGTAATTTCACCAGTATTTTTGTCGATAGTTGGTATTTGTGGTTTACCAACGC 3360 |||| | |||| ||| ||||| || || || ||||| | |||| | | | Sbjct 2163 TTCATTTTAATATTTTACCTGTATTATTATCTATTTCTGGTAAATTAGGTTCATTTAAAC 2222 Query 3361 CAGTTCAACGATAAATTGCTTTATA 3385 || ||||||||||||||||||||| Sbjct 2223 CATCTCAACGATAAATTGCTTTATA 2247 Score = 260 bits (288), Expect = 7e-66 Identities = 227/281 (81%), Gaps = 1/281 (0%) Strand=Plus/Plus Query 1258 GGTATTAATGAAACTGATTTTATTAATACAATGTTTTTACGCAGTAGtttttttGAAAAT 1317 |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 132 GGTATTAATGAAACTGATTTTATTAATACAATGTTTTTACGCAGTACTTTTTTCGAAAAT 191 Query 1318 TGATCGGAAACAAATTATTTTATTAATCCAACTTTAAAAACATCAAAAAATTTATTGTTT 1377 ||| || |||||||||||||||||||| |||||||||||||||||| ||| | | | Sbjct 192 TGAAGTGATACAAATTATTTTATTAATCCTACTTTAAAAACATCAAAATCATTAATTTAT 251 Query 1378 AATGATAAATGGTATTTGGATTTTTTACAAGATAGTTATTCAACTGGAGTTGTTTATGAT 1437 || |||||||| ||||| ||||||||| | ||||||||||| ||||| ||| ||| || Sbjct 252 AACGATAAATGATATTTAGATTTTTTAAAGGATAGTTATTCGACTGGTGTTTCTTACAAT 311 Query 1438 AAACCTAATGAAGTATTTTTGAATTATTATCAACAATGACATAGTTTAAAAAATCGGTAT 1497 ||||| | ||| |||| || ||| ||| || | ||| ||| || | || | ||| Sbjct 312 AAACCAAGTGATAAATTTATGGATTTATATAAAAATTGAGATACTTATACTAAACAATAT 371 Query 1498 ATGGTTGAAAAATTTTATGATGTT-AAAAAAGAGAAttttt 1537 | || | ||||||||||||||| | |||| | ||||||| Sbjct 372 AACATTAATAAATTTTATGATGTTGATAAAAAACAATTTTT 412 Score = 131 bits (144), Expect = 8e-27 Identities = 244/357 (68%), Gaps = 31/357 (9%) Strand=Plus/Plus Query 1828 TATAAAGCAATTTACCGTTGAACTGGCGTTGGTAAACCACAATTACCAACCATTGATAAA 1887 |||||||||||||| |||||| ||| | | |||| | |||||| || ||||| Sbjct 660 TATAAAGCAATTTATCGTTGAGATGGTTTAAATGAACCTAATTTACCAGAAATAGATAAT 719 Query 1888 AACACTGGTGAAATTACTGATTGAA------ATAGTTATCAACAAACTCG--CGTAAAAG 1939 || |||||| || | | | ||||| || ||||||| | ||||| | | Sbjct 720 AATACTGGTAAATTAATTTTTTGAACTGATAATCATTATCAAAATACTCGTTCTTT---- 775 Query 1940 AATTTATTGATTTATCTTTATATTCTGTTTTGCTAGAAAATACTAGGGTTCAGCAAGGTG 1999 |||| | | ||| || || || | || | |||||||| ||| || |||||||| | Sbjct 776 --TTTACTTAAATATATTGATGTTATTATT--CAAGAAAATATTAGAGTACAGCAAGGCG 831 Query 2000 GTAGTGCGGATTATGAAAATCCGAATAAGGTTGGAACAAAGCGGATAATTTTTGATTTTG 2059 ||| | | |||||||| | | | | | ||||||||| | || ||||| |||||||||| Sbjct 832 GTAATCCCGATTATGAGAGTTCCATT---GTTGGAACACAACGAATAATATTTGATTTTG 888 Query 2060 AGACGGTTGATG-AATTGGATGTTA-----------AAAATATTAAAAAAGCAATTTATC 2107 | | ||||||| || || | | || | |||||||||| ||||||||| Sbjct 889 AAATTGTTGATGAAAGTGAAAGATATACTGCTATGTATTTTATTAAAAAATCAATTTATC 948 Query 2108 GAATGATTTTGACTGTTGATGAAGCAAATTTAATTATTTCTGGTAGTTTAGAGTTAA 2164 | |||||||| || ||||| || ||| |||||| |||| |||||||| |||| Sbjct 949 GGATGATTTTAACGATTGATAAAAATAATAACATTATTGCTGGCAGTTTAGAATTAA 1005 Score = 91.5 bits (100), Expect = 7e-15 Identities = 79/96 (82%), Gaps = 4/96 (4%) Strand=Plus/Plus Query 1257 AGGTATTAATGAAACTGATTTTATTAATACAATGTTTTTACGCAGTAGtttttt---tGA 1313 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 67 AGGAATTAATGAAACTGATTTTATTAATACAATGTTTTTACGCAGTACTTTTTTNTGTAG 126 Query 1314 AAATTGATCGGAAACAAA-TTATTTTATTAATCCAA 1348 ||| || | || ||| | ||||||||||| ||| Sbjct 127 AAACTGGTATTAATGAAACTGATTTTATTAATACAA 162 Score = 84.2 bits (92), Expect = 1e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 3804 GTAAATTAATGAAATATATTATTAATAATTTTAATTTGTTTGATTTACAAGCAAAATTAA 3863 || ||||||||||||||||| || || |||||||||| |||||||||||||||||| Sbjct 3486 GTGAATTAATGAAATATATTGTTGATGATTTTAATTTAAGCGATTTACAAGCAAAATTAC 3545 Query 3864 AGAATTTTTTAAGT 3877 | ||||||||||| Sbjct 3546 AAGATTTTTTAAGT 3559 >seq139757 Length=1572 Score = 268 bits (296), Expect = 5e-68 Identities = 267/360 (74%), Gaps = 20/360 (6%) Strand=Plus/Plus Query 5167 TGTAGAAACCACATACattttgtatttttg--gtttttacagttttggaaagtaaatttt 5224 ||||||||||||| |||||||||| ||||| || |||||| |||| |||| ||||||| Sbjct 1048 TGTAGAAACCACACACATTTTGTACTTTTGTGGTATTTACATTTTTAGAAAC-AAATTTT 1106 Query 5225 tttaatatttttAATTGAGGAGTTGAAATTATGCAAACAAAGCAATATTTTATTTTGCGG 5284 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1107 ATTAATATTTT-AATTGAGGAGTTGAAATTATGCAAACAAAGCAATATTTTATTTTGCGG 1165 Query 5285 TCCCTAGTGAAAAAGTATGGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 5344 || |||||||||| |||||||| Sbjct 1166 TCGTTAGTGAAAAAATATGGTAAAGATATTGTTATTAATACTGTCAATAAGATTGCAAAA 1225 Query 5345 NNNNNNNNNNTTAAAAAGTAAAAGAATAAATTATTCCGCGTAATTTATTAGCGGATAATT 5404 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1226 GATATTGAAATTAAAAAGTAAAAGAATAAATTATTCCGCGTAATTTATTAGCGGATAATT 1285 Query 5405 TATTCAGTAGTGTTTTTAA-TG---------------GAGCGAAGCGAGTTTGCAAATTT 5448 |||||| | ||||||||| || ||||| ||||||||||||||||| Sbjct 1286 TATTCAACAATGTTTTTAAGTGGAGCAAAGCGACAACGAGCGGAGCGAGTTTGCAAATTT 1345 Query 5449 CAAttttttagtttttAGAAAGGAGATGTATTATGCCAACTTGATTAACGACAATATTTA 5508 |||||||||| ||| | |||||||| | ||| |||||| |||||||| |||||||| Sbjct 1346 CAATTTTTTAATTTATTGAAAGGAGTTATATCATGCCAGTATGATTAACATGAATATTTA 1405 >seq84797 Length=1465 Score = 237 bits (262), Expect = 8e-59 Identities = 188/226 (83%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 1258 GGTATTAATGAAACTGATTTTATTAATACAATGTTTTTACGCAGTAGtttttttGAAAAT 1317 ||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 994 GGTATAAATGAAACTGATTTTATTAATACAATGTTTTTACGCAGCACTTTTTTTGAAAAT 935 Query 1318 TGATCGGAAACAAATTATTTTATTAATCCAACTTTAAAAACATCAAAAAATTTATTGTTT 1377 ||| || || |||||||||||||||||||||||||||||||||||| ||| | | Sbjct 934 TGAAGTGATACCAATTATTTTATTAATCCAACTTTAAAAACATCAAAATCATTAACTTAT 875 Query 1378 AATGATAAATGGTATTTGGATTTTTTACAAGATAGTTATTCAACTGGAGTTGTTTATGAT 1437 || |||||||| || || ||||||||| | ||||||||||||||||| ||| ||||||| Sbjct 874 AACGATAAATGATACTTAGATTTTTTAAAGGATAGTTATTCAACTGGTGTTTCTTATGAT 815 Query 1438 AAACCTAATGAAGTATTTTTGAATTATTATCAACAATGACATAGTT 1483 ||||| | ||| |||| || ||| ||| || | ||| ||| || Sbjct 814 AAACCAAGTGATAAATTTATGGATTTATATAAAAATTGAGATACTT 769 Score = 161 bits (178), Expect = 5e-36 Identities = 241/342 (70%), Gaps = 15/342 (4%) Strand=Plus/Minus Query 1830 TAAAGCAATTTACCGTTGAACTGGCGTTGGTAAACCACAATTACCAACCATTGATAAAAA 1889 ||||| |||| |||||| || |||||| |||||||| ||||| | ||| | || Sbjct 402 TAAAGGTCTTTATCGTTGAGACGGAGTTGGTGAACCACAAATACCAGCAATTAACTCTAA 343 Query 1890 CACTGGTGAAATTACTGATTGAAATAGTTATCAACAAACTCGCGTAAAAGAATTTATTGA 1949 |||| ||||||||| ||||||||| | | | |||| | || ||||| ||| | | Sbjct 342 TACTGCTGAAATTACAGATTGAAATGTTGAAAATCAAAATAAAGTTAAAGATTTTTTAAA 283 Query 1950 TTTATCTTTATATTCTGTTTTGCTAGAAAATACTAGGGTTCAGCAAGGTGGTAGTGCGGA 2009 | | |||| || | || | | |||||||| ||| ||||| |||||||||| | | || Sbjct 282 TAATTATTTAGATGTTATTATTCAAGAAAATATTAGAGTTCAACAAGGTGGTAATCCCGA 223 Query 2010 TTATGAAAATCCGAATAAGGTTGGAACAAAGCGGATAATTTTTGATTTTGAGACGGTTGA 2069 |||||| | | | | | ||||| ||| | || ||||||||||||||||| | ||||| Sbjct 222 TTATGAGAGTTCTATT---GTTGGTACACAACGAATAATTTTTGATTTTGAAATTGTTGA 166 Query 2070 TGAATTGGA---------TGTTA---AAAATATTAAAAAAGCAATTTATCGAATGATTTT 2117 |||| || || || | |||||||||| |||||||||| |||||||| Sbjct 165 TGAAAGCGACAGATATACTGCTATGTATTTTATTAAAAAATCAATTTATCGGATGATTTT 106 Query 2118 GACTGTTGATGAAGCAAATTTAATTATTTCTGGTAGTTTAGA 2159 || ||||| || ||| || ||| |||| |||||||| Sbjct 105 AACGATTGATAAAAATAATAACATCATTGCTGGAAGTTTAGA 64 >seq170189 Length=1595 Score = 84.2 bits (92), Expect = 1e-12 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 3283 AAGTTCCTTTTTGTTCTTTTCAATCAGTAATTTCACCAGTATTTTTGTCGATAGTTGGTA 3342 ||| | ||||| || ||||||||| ||||||||||||||||| || | ||||||| Sbjct 1219 AAGCTACTTTTATTTATTTTCAATCTGTAATTTCACCAGTATTAGGGTTAACAGTTGGTT 1160 Query 3343 TTTGTGGTTTACCAACGCCAGTTCAACGATAAAT 3376 ||| |||| |||||| ||| |||||||||||| Sbjct 1159 TTTCGGGTTCACCAACTCCATCTCAACGATAAAT 1126 >seq22225 Length=1522 Score = 84.2 bits (92), Expect = 1e-12 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 3283 AAGTTCCTTTTTGTTCTTTTCAATCAGTAATTTCACCAGTATTTTTGTCGATAGTTGGTA 3342 ||| | ||||| || ||||||||| ||||||||||||||||| || | ||||||| Sbjct 1064 AAGCTACTTTTATTTATTTTCAATCTGTAATTTCACCAGTATTAGGGTTAACAGTTGGTT 1005 Query 3343 TTTGTGGTTTACCAACGCCAGTTCAACGATAAAT 3376 ||| |||| |||||| ||| |||||||||||| Sbjct 1004 TTTCGGGTTCACCAACTCCATCTCAACGATAAAT 971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24683579490416