Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq967 369 2e-98 seq3149 165 3e-37 seq2559 82.4 3e-12 >seq967 Length=20607 Score = 369 bits (408), Expect = 2e-98 Identities = 223/230 (97%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 5688 CCCAAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGGTT 5747 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 CCCAAAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCC-TGATAGACGGTT 59 Query 5748 TTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGA 5807 |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| Sbjct 60 TTTCGCCCTTTGACGTTGGAGTCCACGT-CTTTAATAGTGGACTCTTGGTCCAAACTGGA 118 Query 5808 ACAACACTCAACCCTATCTCGGGCT-ATTCTTTTGATTTATAAGGGATTTTGCCGATTTC 5866 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 119 ACAACACTCAACCCTATCTCGGTCTAATTCTTTTGATTTATAAGGGATTTTGCCGATTTC 178 Query 5867 GGCCTATTGGTT-AAAAAATGAGCTGATTTAACAAAAATTTAACGCGAAT 5915 |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 179 GGCCTATTGGTTAAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAAT 228 >seq3149 Length=1659461 Score = 165 bits (182), Expect = 3e-37 Identities = 97/101 (96%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 5815 TCAACCCTATCTCGGGCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCTATT 5874 |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 718950 TCAATGCTATCTCGGTCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCTATT 718891 Query 5875 GGTTAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAAT 5915 | ||||||||||||||||||||||||||||||||||||||| Sbjct 718890 GTTTAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAAT 718850 >seq2559 Length=338454 Score = 82.4 bits (90), Expect = 3e-12 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 5865 TCGGCCTATT-GGTTAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAAT 5915 || ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 111379 TCCGCCTATTTGGTTAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAAT 111328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20386472712124