Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_025824.1 Length=6408 Score E Sequences producing significant alignments: (Bits) Value seq967 336 9e-89 seq3149 150 7e-33 seq2559 104 1e-18 >seq967 Length=20607 Score = 336 bits (372), Expect = 9e-89 Identities = 230/254 (91%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 5693 AAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTC 5752 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 5 AAAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCC-TGATAGACGGTTTTTC 63 Query 5753 GCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAA 5812 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct 64 GCCCTTTGACGTTGGAGTCCACGT-CTTTAATAGTGGACTCTTGGTCCAAACTGGAACAA 122 Query 5813 CACTCACAACTAACTCGGCCTA-TTCTTTTGATTTATAAGGATTTTTGTCATTTTCTGCT 5871 |||||| ||| ||||| ||| |||||||||||||||||| ||||| | |||| || Sbjct 123 CACTCAACCCTATCTCGGTCTAATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCC 182 Query 5872 TACTGGTTAAAAAA-TAAGCTGATTTAACAAATATTTAACGCGAAATTTAACAAAACATT 5930 || ||||||||||| | ||||||||||||||| |||||||||||| |||||||||| ||| Sbjct 183 TATTGGTTAAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAATTTTAACAAAATATT 242 Query 5931 AACGTTTACAATTT 5944 |||| ||||||||| Sbjct 243 AACGCTTACAATTT 256 >seq3149 Length=1659461 Score = 150 bits (166), Expect = 7e-33 Identities = 107/123 (87%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 5822 CTAACTCGGCCTATTCTTTTGATTTATAAGGATTTTTGTCATTTTCTGCTTACTGGTTAA 5881 ||| ||||| ||||||||||||||||||||| ||||| | |||| || || || |||| Sbjct 718944 CTATCTCGGTCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCTATTGTTTAA 718885 Query 5882 AAAATAAGCTGATTTAACAAATATTTAACGCGAAATTTAACAAAACATTAACGTTTACAA 5941 ||||| ||||||||||||||| |||||||||||| |||||||||| ||||||| |||||| Sbjct 718884 AAAATGAGCTGATTTAACAAAAATTTAACGCGAATTTTAACAAAATATTAACGCTTACAA 718825 Query 5942 TTT 5944 ||| Sbjct 718824 TTT 718822 >seq2559 Length=338454 Score = 104 bits (114), Expect = 1e-18 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 5875 TGGTTAAAAAATAAGCTGATTTAACAAATATTTAACGCGAAATTTAACAAAACATTAACG 5934 |||||||||||| ||||||||||||||| |||||||||||| |||||||||| ||||||| Sbjct 111369 TGGTTAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAATTTTAACAAAATATTAACG 111310 Query 5935 TTTACAATTT 5944 ||||||||| Sbjct 111309 CTTACAATTT 111300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20389672597968