Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dactylopius_20coccus_20[genbank_20GCA_5F000833685.1_202015-02-09] 1,499 sequences; 18,613,147 total letters Query= NC_001270.2 Length=6825 Score E Sequences producing significant alignments: (Bits) Value seq1267 199 2e-47 seq1167 199 2e-47 seq1075 150 8e-33 seq1257 145 3e-31 seq973 140 1e-29 seq1217 129 3e-26 seq1112 123 1e-24 seq1244 120 1e-23 seq768 114 6e-22 >seq1267 Length=743 Score = 199 bits (220), Expect = 2e-47 Identities = 292/408 (72%), Gaps = 5/408 (1%) Strand=Plus/Plus Query 2567 TGGTAATTATGTTAAAAATATTGTTTTACCACT-AGAATTAGTtaataataatcctcgta 2625 |||| |||||| |||||||| ||||||| | || || || | |||||| |||| Sbjct 170 TGGTGCTTATGTAAAAAATATAATTTTACCTATGAGTGCTATTTTA-AATAATAAGCGTA 228 Query 2626 ataaaatgggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTC 2685 || || | || |||||||| || | ||||||||||| || | ||| | ||||| Sbjct 229 ATGAAGTTGGTATTAAAAATTTAGGTATTAATGATAAAAAGTTACGTAATTCTACTATTC 288 Query 2686 GCTCGCAAGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAA 2745 | | || ||| | || | ||||| ||| | ||||||| |||| ||| ||||| Sbjct 289 GTACTAAAACAAAATTAATACATAAAGCGTATCATAATTTTTATAATTCAAAAGTTTTAA 348 Query 2746 GTTTTTTGACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATT 2805 ||||| | |||||||||||||| | |||| | ||||| |||| ||| ||| ||||| Sbjct 349 GTTTTGTTACTTTAACTTATGCTGATAATATGCAAGATATTAATAAAGCAAAACATGATA 408 Query 2806 TAAAGTTATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATC 2865 | |||| ||||| | |||| ||||||||||| | |||| ||| ||||| || Sbjct 409 TTGCTATATTCTTTAAACGTTTAAAACGTTGATGAAATGACCCTAAACGTGCTAAATAT- 467 Query 2866 ATAAAGGAATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACT 2925 || ||| ||||||||||||||| |||||| |||||||||||||| || |||||| Sbjct 468 TTAGGTGAA--TTAAAATATATGTATGTTTATGAATATCAAAAACGCGGTGCTATTCACT 525 Query 2926 TTCATATCATATTAAACCAAAAAATACCTAACAGTGTTGTACAACAAT 2973 ||||||| |||| || ||||||| ||| ||| | | | ||||| Sbjct 526 TTCATATATTATTTAATAGGAAAATACATAAAAGTATGTTGCCACAAT 573 >seq1167 Length=987 Score = 199 bits (220), Expect = 2e-47 Identities = 292/408 (72%), Gaps = 5/408 (1%) Strand=Plus/Minus Query 2567 TGGTAATTATGTTAAAAATATTGTTTTACCACT-AGAATTAGTtaataataatcctcgta 2625 |||| ||||||||||||||| ||||||| | || || | | |||||| |||| Sbjct 773 TGGTGCTTATGTTAAAAATATAATTTTACCTATGAGCGCTATATTA-AATAATAAACGTA 715 Query 2626 ataaaatgggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTC 2685 || || | || |||||||| || | ||||||||||| || |||||| ||||| Sbjct 714 ATGAAGTTGGTATTAAAAATTTAGGTATTAATGATAAAAAGTTACTTAATAGTACTATTC 655 Query 2686 GCTCGCAAGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAA 2745 | | || || | || | ||||||| | | ||||||| |||| ||| ||||| Sbjct 654 GTACTAAAACAAGATTAATACATAAAGCATTTCATAATTTTTATAATTCAAAAGTTTTAA 595 Query 2746 GTTTTTTGACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATT 2805 ||||| | |||||||||||||| | ||| ||||||| |||| ||| ||| ||||| Sbjct 594 GTTTTGTTACTTTAACTTATGCAGATAACATGAAAGATATTAATAAAGCAAAACATGATA 535 Query 2806 TAAAGTTATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATC 2865 | |||| ||||| | |||| ||||||||||| | |||| ||| ||||| || Sbjct 534 TTGCTATATTCTTTAAACGTTTAAAGCGTTGATGAAATGACCCTAAACGTGCTAAATAT- 476 Query 2866 ATAAAGGAATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACT 2925 || ||| ||||||||||||||| ||| || ||||||||||| || || |||| | Sbjct 475 TTAGGTGAA--TTAAAATATATGTATGTTTACGAATATCAAAAACGTGGTGCTATTCATT 418 Query 2926 TTCATATCATATTAAACCAAAAAATACCTAACAGTGTTGTACAACAAT 2973 ||||||| |||| ||| |||||||| ||| ||| | ||| ||||| Sbjct 417 TTCATATACTATTTAACAGAAAAATACATAAGAGTATGTTACCACAAT 370 >seq1075 Length=1389 Score = 150 bits (166), Expect = 8e-33 Identities = 287/421 (68%), Gaps = 9/421 (2%) Strand=Plus/Plus Query 2573 TTATGTTAAAAATATTGTTTTACCACTAGAATTAGTtaataataatcctcgtaataaaat 2632 ||||||||||||| | |||||||| | || | ||||||| | | ||||||| Sbjct 117 TTATGTTAAAAATGTAGTTTTACCTATTTCTTTTTTAAATAATATTG---GAAATAAAAA 173 Query 2633 gggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTCGCTCGCA 2692 || |||| | || ||| | |||||||| | |||||| | ||||| | | Sbjct 174 AGG---TAAATGTTATGTTGGTAATAAACAAAAATTGAGAAATAGTACTGTTCGCACTAA 230 Query 2693 AGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTT 2752 | |||| |||| || |||| | ||||||| ||| |||||| ||||||||| | Sbjct 231 AACTAATTTAATTCAAAAGGCATTACATAATTTTTATAATAGTAAAATGTTAAGTTTTAT 290 Query 2753 GACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTT 2812 |||||||| ||| | |||| | |||||||||||||| ||||| ||| | || Sbjct 291 TACTTTAACATATAAAGATAATATGCAAGATGTTAAAAAAGCAAAAAAAGATATTGGTTT 350 Query 2813 ATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGG 2872 |||||||| ||| |||| |||||||| | |||| |||| | || ||| || Sbjct 351 ATTTTTTATTAAATTAAAGAAATGATGAAATGACCCTAAACGTTTTGAA---CATTTGGG 407 Query 2873 AATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATAT 2932 | ||||||||| | ||| |||||| |||||| | || || || ||||| |||||||| Sbjct 408 AGAATTAAAATATTTTTATGTTTATGAATATCAAGACCGTGGTGCGGTTCATTTTCATAT 467 Query 2933 CATATTAAACCAAAAAATACCTAACAGTGTTGTACAACAATACTGAAAACACGGTATTAA 2992 || || || ||| |||| ||| ||| | | | ||| |||| || ||| |||| Sbjct 468 AATTTTTAATAGAAAGATACATAAAAGTATGTTGGCAGAATGATGAACTCATGGTTTTAA 527 Query 2993 T 2993 | Sbjct 528 T 528 >seq1257 Length=764 Score = 145 bits (160), Expect = 3e-31 Identities = 231/327 (71%), Gaps = 11/327 (3%) Strand=Plus/Minus Query 2712 GCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTTGACTTTAACTTATGCCGTT 2771 || ||| | ||||||| || ||||| |||||||||| | |||||||||||||| | Sbjct 724 GCTTATCATAATTTTTATGATAGTAAAGTTTTAAGTTTTGTTACTTTAACTTATGCTGAA 665 Query 2772 AATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTTATTTTTTAATAATATAAAT 2831 ||| ||||||||||||| ||| || || | ||||||||||| | | || Sbjct 664 AATATGAAAGATGTTAAACTGGCAAAATATCATATTGCTTTATTTTTTAAACGTTTGAAA 605 Query 2832 CGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGGAATTTTAAAATATATGTAT 2891 |||||||| ||||||| ||| | ||||| || ||| ||||||||| | ||| Sbjct 604 AAGTGATGAAATAATCCTAAGCGTGC--AAAAT-ATTTAGGTGAGTTAAAATATCTTTAT 548 Query 2892 ACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATATCATATTAAACCAAAAAATA 2951 |||||||||||||||||| || |||||||| || ||||| | || || ||||||| Sbjct 547 GTTTATGAGTATCAAAAACGTGGTGCAGTTCATTTCCATATACTTTTTAATAGAAAAATA 488 Query 2952 CCTAACAGTGTTGTACAACAATACTGAAAACACGGTATTAATAAAAATATTAAAGTTCGT 3011 | ||| ||| | | | ||||| ||| | ||||||||| || | | |||| || Sbjct 487 CATAAAAGTATGTTGCCACAATGATGACCATTTGGTATTAAT---GATGTAAGAGTT-GT 432 Query 3012 GC----AGGTTCTAATGAAGATGTTGT 3034 | |||| |||||||| |||| || Sbjct 431 TCAAAAAGGTACTAATGAAAATGTAGT 405 >seq973 Length=1907 Score = 140 bits (154), Expect = 1e-29 Identities = 263/382 (69%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 2573 TTATGTTAAAAATATTGTTTTACCACTAGAATTAGTtaataataatcctcgtaataaaat 2632 |||||||||||||||||||||||| | || |||| ||||| | | ||||| | Sbjct 1152 TTATGTTAAAAATATTGTTTTACCTATTTCTTT--TTAA--ATAATATTGGAAATAAGAA 1207 Query 2633 gggagttaaaaatactggaaaaaatgataaaaaatTGTGGAATAGTCGTATTCGCTCGCA 2692 || |||| | || ||| | | ||||| | |||| | | |||| | | Sbjct 1208 AGG---TAAATGTTATGTTGGTAATAAGCAGAAATTAAGAAATAATACTGTTCGTACTAA 1264 Query 2693 AGGAAATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTT 2752 | |||| |||| ||||||| | ||||||| ||| |||| | ||| |||||| | Sbjct 1265 AAATAATTTAATTCAAAAAGCATTGCATAATTTTTATAATAGTAATATTTTGAGTTTTGT 1324 Query 2753 GACTTTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTT 2812 |||||||||||| | ||| | ||||||||||| || ||||| || | || Sbjct 1325 TACTTTAACTTATAAAGAAAATATGCAAGATGTTAAACAAGCAAAAAAAGACATTCGTTT 1384 Query 2813 ATTTTTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGG 2872 ||||||| ||| |||| |||||||| | |||| ||| || || || || | Sbjct 1385 ATTTTTTCTTAAATTAAAGAAATGATGAAATGACCCTAAGCGTGCTGAATAT-ATGGGTG 1443 Query 2873 AATTTTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATAT 2932 |||| ||||||||||||| |||||| |||||| | || |||||||| || |||||||| Sbjct 1444 AATT--AAAATATATGTATGTTTATGAATATCAAGACCGTGGAGCAGTACATTTTCATAT 1501 Query 2933 CATATTAAACCAAAAAATACCT 2954 || || || |||||||||| Sbjct 1502 AATTTTTAATAGAAAAATACCT 1523 >seq1217 Length=851 Score = 129 bits (142), Expect = 3e-26 Identities = 184/257 (72%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 2697 AATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTTGACT 2756 |||| |||| ||||||| | ||||||| ||| |||||| || |||||| | ||| Sbjct 111 AATTTAATTCAAAAAGCATTACATAATTTTTATAATAGTAAAATGTTGAGTTTTGTTACT 170 Query 2757 TTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTTATTT 2816 ||||||||| | ||| | ||||||||||| ||| ||||| ||| | || ||| Sbjct 171 TTAACTTATAAAGAAAATATGCAAGATGTTAAACAATCAAAAAAAGATATTCGTTTGTTT 230 Query 2817 TTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGGAATT 2876 ||| ||| |||| || ||||| | || | ||| ||||| || || ||| Sbjct 231 TTTCTTAAATTAAAAAAATGGTGAAATGACCCAAAGCGTGCTAAATAT-ATGGGTGAA-- 287 Query 2877 TTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATATCATA 2936 ||||||||||||||| |||||| |||||| | || |||||||| || |||||||| || Sbjct 288 TTAAAATATATGTATGTTTATGAATATCAAGACCGTGGAGCAGTACATTTTCATATAATT 347 Query 2937 TTAAACCAAAAAATACC 2953 || || ||| ||||| Sbjct 348 TTTAATAGAAAGATACC 364 >seq1112 Length=1225 Score = 123 bits (136), Expect = 1e-24 Identities = 169/234 (72%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 2721 AATTTTTGAAATTGTAAAAATTTAAGTTTTTTGACTTTAACTTATGCCGTTAATGAGAAA 2780 ||||||| ||| |||| | ||||||||| | |||||||||||||| | ||| | || Sbjct 383 AATTTTTATAATAGTAATATGTTAAGTTTTGTTACTTTAACTTATGCTGAAAATATGCAA 442 Query 2781 GATGTTAAAAAATGTAAAAATGATTTAAAGTTATTTTTTAATAATATAAATCGTTGATGA 2840 ||||||||| || ||||| ||| | ||||||||| ||| |||| |||||| Sbjct 443 GATGTTAAACAAGCAAAAAAAGATATTCGTTTATTTTTTCTTAAATTAAAGAAATGATGA 502 Query 2841 AACAATCCTATTCGTTCTAAAAATCATAAAGGAATTTTAAAATATATGTATACTTATGAG 2900 || | |||| ||||||||| || || ||| || ||| || | ||| |||||| Sbjct 503 AATGACCCTAAACGTTCTAAATAT-TTAGGTGAA--TTGAAACATTTTTATGTTTATGAA 559 Query 2901 TATCAAAAACGCGGAGCAGTTCACTTTCATATCATATTAAACCAAAAAATACCT 2954 |||||| | || || || ||||| |||||||| || || || ||| |||||| Sbjct 560 TATCAAGACCGTGGTGCGGTTCATTTTCATATAATTTTTAATAGAAAGATACCT 613 >seq1244 Length=789 Score = 120 bits (132), Expect = 1e-23 Identities = 179/252 (71%), Gaps = 3/252 (1%) Strand=Plus/Plus Query 2709 AAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTTGACTTTAACTTATGCC 2768 ||||||| | |||||||| || || ||| ||||||||| | |||||||||||| Sbjct 143 AAAGCATTACATAATTTTTGTGATAGTCAAATGTTAAGTTTTCTTACTTTAACTTATAAA 202 Query 2769 GTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTTATTTTTTAATAATATA 2828 | |||| | ||||| ||| |||| ||||| ||| | ||||||||| ||| || Sbjct 203 GATAATATGCAAGATATTAGAAAAGCAAAAAAAGATATTCGTTTATTTTTTCTTAAATTA 262 Query 2829 AATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGGAATTTTAAAATATATG 2888 || |||||||| | |||| ||||||||| || || ||| || ||| || | Sbjct 263 AAGAAATGATGAAATGACCCTAAACGTTCTAAATAT-TTAGGTGAA--TTGAAACATTTT 319 Query 2889 TATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATATCATATTAAACCAAAAA 2948 ||| |||||| |||||| | || || || ||| | ||||||||| | || || | ||| Sbjct 320 TATGTTTATGAATATCAAGACCGTGGTGCGGTTTATTTTCATATCTTGTTTAATCGTAAA 379 Query 2949 ATACCTAACAGT 2960 |||||| | ||| Sbjct 380 ATACCTTATAGT 391 >seq768 Length=3935 Score = 114 bits (126), Expect = 6e-22 Identities = 204/297 (69%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 2697 AATTGTATTCGGAAAGCATATGAAAATTTTTGAAATTGTAAAAATTTAAGTTTTTTGACT 2756 |||| |||| ||||||| | ||||||| ||| |||| | || |||||| | ||| Sbjct 720 AATTTAATTCAAAAAGCATTACATAATTTTTATAATAGTAAGATGTTGAGTTTTGTTACT 661 Query 2757 TTAACTTATGCCGTTAATGAGAAAGATGTTAAAAAATGTAAAAATGATTTAAAGTTATTT 2816 ||||||||| |||| | |||||||||||||| ||||| ||| | |||||| Sbjct 660 TTAACTTATAGTAATAATATGCAAGATGTTAAAAAAGCAAAAAAAGATATTCGTTTATTT 601 Query 2817 TTTAATAATATAAATCGTTGATGAAACAATCCTATTCGTTCTAAAAATCATAAAGGAATT 2876 ||| ||| |||| |||||||| | |||| |||| | ||| |||| Sbjct 600 TTTCTTAAATTAAAGAAATGATGAAATGACCCTAAACGTTTT---TTGCATTTAGGAGAA 544 Query 2877 TTAAAATATATGTATACTTATGAGTATCAAAAACGCGGAGCAGTTCACTTTCATATCATA 2936 ||||||||| | ||| ||||||||||||| || || || | || |||||||| || Sbjct 543 TTAAAATATTTTTATGTTTATGAGTATCAATCTCGTGGTGCTATACATTTTCATATAATT 484 Query 2937 TTAAACCAAAAAATACCTAACAGTGTTGTACAACAATACTGAAAACACGGTATTAAT 2993 || || ||| |||| ||| ||| | || | ||| |||| || ||| ||||| Sbjct 483 TTTAATAGAAAGATACATAAAAGTATGTTAGCAGAATGATGAACTCATGGTTTTAAT 427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 21724433638404