Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dendroctonus_20ponderosae_20[refseq_20GCF_5F000355655.1_202013-04- 10] 8,188 sequences; 252,847,629 total letters Query= NC_001954.1 Length=8454 Score E Sequences producing significant alignments: (Bits) Value seq1803 96.9 2e-16 seq6278 91.5 8e-15 >seq1803 Length=1097 Score = 96.9 bits (106), Expect = 2e-16 Identities = 280/427 (66%), Gaps = 7/427 (2%) Strand=Plus/Minus Query 6597 TATCGCAAATATCCGCAGAGACTACCTTCATAAAGTCACAACGACCGTCAGCAAAAACCA 6656 ||| || ||||| || |||||| | ||||||||||| || || ||||||||||||| Sbjct 423 TATTGCCAATATTCGGCATGACTACTTGCATAAAGTCACTACAACTCTCAGCAAAAACCA 364 Query 6657 CGCAATGATAGTCATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTAC 6716 ||||||||| || ||||||| || || || ||| ||||| ||||||||| ||||| Sbjct 363 CGCAATGATCGTAGTTGAGGACTTAAAAGTAGCCAATATGTCGAAGTCAGCAAAAGGTAC 304 Query 6717 GGTCAGCCAGCCGGGGCGCAATGTCCGGGCAAAATCAGGTTTAAACCGTTCGATACTGGA 6776 || | || ||||| || || ||||| || ||| || || || || Sbjct 303 AATCGAGAACAAAGGAAAGAATGTGAAAGCCAAGTCAGGCTTGAACAAATCAATTCTTGA 244 Query 6777 TCAGGGCTGGTATGAAATGC--GCCGCCAGCTT-GAGTACAAACAGCTCTGGCGTGGAGG 6833 ||| || |||| ||||| | | | || ||||| || || | ||||| || || Sbjct 243 TCAAGGTTGGT---CAATGCTTGTCAAAATATTGGAGTATAAGCAACAATGGCGAGGTGG 187 Query 6834 TCAGGTGCTTGCTGTTCCGCCAGCGTACACAAGCCAGCGTTGCGCGTGCTGTGGTCATAC 6893 | | || ||| || || ||||| || ||| | || |||||| Sbjct 186 TTTACTCGTTAAAGTTGACCCTAGATATACAAGTCAAACTTGTAGCTCATGCGGTCATGT 127 Query 6894 AGCGAAAGAAAACCGCCTGTCACAAAGTCAATTCAGATGCCAGGTATGTGGATATACAGC 6953 ||||||||| || | | | ||| | |||| || | |||||| | || | Sbjct 126 AGCGAAAGAGAATAGACAAACTCAATCTAAATTTGAGTGTGTTGAATGTGGCTTTAGCGA 67 Query 6954 GAACGCCGATGTAAATGGCGCTCGTAACATTTTAGCGGCGGGGCACGCCGTACTTGCCTG 7013 ||| || ||| | || | |||| |||||||||||||| || || ||||| ||| ||| Sbjct 66 GAATGCGGATATTAACGCTTCTCGCAACATTTTAGCGGCAGGACATGCCGT-TTTGTCTG 8 Query 7014 TGGAGGG 7020 ||||||| Sbjct 7 TGGAGGG 1 >seq6278 Length=17950 Score = 91.5 bits (100), Expect = 8e-15 Identities = 308/469 (66%), Gaps = 18/469 (4%) Strand=Plus/Plus Query 6597 TATCGCAAATATCCGCAGAGACTACCTTCATAAAGTCACAACGACCGTCAGCAAAAACCA 6656 ||| || ||||| || |||||| | || |||||||| || || ||||||||||||| Sbjct 17218 TATTGCCAATATTCGGCATGACTACTTGCACAAAGTCACGACAACTCTCAGCAAAAACCA 17277 Query 6657 CGCAATGATAGTCATTGAGGATTTGAAGGTCAGCAACATGTCAAAGTCAGCAGCGGGTAC 6716 ||||||||| || ||||||| || || || ||| ||||| |||||||| || | Sbjct 17278 CGCAATGATCGTAGTTGAGGACTTAAAAGTAGCCAATATGTCGAAGTCAGCCAAAGGCTC 17337 Query 6717 GGTCAGCCAGCCGGGGCGCAATGTCCGGGCAAAATCAGGTTTAAACCGTTCGATACTGGA 6776 || | || ||||| || |||||||| |||||| || || || || Sbjct 17338 AATCGAAGAAAAAGGAAAGAATGTTAAAGCTAAATCAGGCTTAAACAAATCAATCCTAGA 17397 Query 6777 TCAGGGCTGGTATGAAATGCGCCGCCA---GCTTGAGTACAAACAGCTCTGGCGTGGAGG 6833 ||| || |||| ||||| | | | | ||||| || || | ||||| || || Sbjct 17398 TCAAGGTTGGT---CAATGCTTGTCAATATGTTGGAGTATAAGCAACAATGGCGAGGTGG 17454 Query 6834 TCAGGTGCTTGCTGTTCCGCCAGCGTACACAAGCCAGCGTTGCGCGTGCTGTGGTCATAC 6893 | | || || || || ||||| ||| ||| | || |||||| Sbjct 17455 TTTACTCGTTAAGATTGACCCTAGATATACAAGTCAGACTTGTAGTTCATGCGGTCATGT 17514 Query 6894 AGCGAAAGAAAACCG-CCT-GTCA--CAAAGTCAATTCAG-ATGCCAGGTATGTGGATAT 6948 || |||||||| | ||| ||| | |||| || || || || ||||| | | Sbjct 17515 TGCAAAAGAAAATAGACCTACTCAGGCTAAGT---TTGAGTGTGTTAG--TTGTGGTTTT 17569 Query 6949 ACAGCGAACGCCGATGTAAATGGCGCTCGTAACATTTTAGCGGCGGGGCACGCCGTACTT 7008 | | ||| || ||| | || | |||||||||||||||||| ||| || |||| || Sbjct 17570 AGCGAGAATGCAGATATTAACGCTTCTCGTAACATTTTAGCGGTGGGACATACCGT-TTT 17628 Query 7009 GCCTGTGGAGGGACGATGCAGT-CAGACCGCCCGTTGAAGCAGGAACCA 7056 | |||| |||||| ||||| || ||| ||||| |||||||| || || Sbjct 17629 GTCTGTCGAGGGAAGATGCGGTAAAGATCGCCCTGTGAAGCAGAAAGCA 17677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26935118642976