Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diachasma_20alloeum_20[refseq_20GCF_5F001412515.1_202015-10-27] 3,968 sequences; 388,752,668 total letters Query= NC_001954.1 Length=8454 Score E Sequences producing significant alignments: (Bits) Value seq3637 342 3e-90 >seq3637 Length=2064 Score = 342 bits (378), Expect = 3e-90 Identities = 706/1042 (68%), Gaps = 15/1042 (1%) Strand=Plus/Plus Query 7316 ATGTTTTTTGACTGGCTGACTATTGAACAGGATTTTGGCTTTCAGCTACCGATTTTGAGT 7375 ||||| |||| ||||| |||||||||||||||||||| ||| |||| || ||| || | Sbjct 489 ATGTTCCTTGATTGGCTTACTATTGAACAGGATTTTGGTTTTGAGCTGCCTATTATGGGA 548 Query 7376 GATGTTGCCTATCAGCGCATCCACCTCGAAAGCGGGGAAGCGTCAGCTCTGAGTCAGCCA 7435 |||||| ||||||||| || || | || || |||||| ||| | |||||| Sbjct 549 AATGTTGTCTATCAGCGTATTCATATTGATTCAGGAGAAGCGGGCGCTGTTTCTCAGCCT 608 Query 7436 ACTTTTCAGCACAAAGGATCTTTTTGTGATGGTTGTTTCGATCTCTATCCGAGGCTCATT 7495 || | || ||| ||||| ||||| | | || || || | ||| || || || | Sbjct 609 GTATTAAAACATGCAGGTTCTTTCTGTGACG-TGGTGTCTATTTTTATTCGGGGATCTGT 667 Query 7496 GCTGAAAGTCTCTGGAAATCCTTCCCGGTGGGGGCGTCTTGATAATTTATTTGGCCTTCC 7555 || ||| | || |||||||| || || ||||| | | ||||| | ||||| | || Sbjct 668 ACTAAAAATGTCCGGAAATCCATCACGTTGGGGTAGGGTAGATAACCTTTTTGGTTTACC 727 Query 7556 AACTTTGGATTCCTGTGTATCGGTTTTCAATACGATCCTTGCTGAAATAGGTT-TACCTC 7614 || | ||| | ||||| | |||| ||| |||||||| | | || || | ||| Sbjct 728 TACAGTTGATGCTTGTGTGTATGTTTATAATGCGATCCTT-CGGTCATTGGAGCTTCCTA 786 Query 7615 AGTTTACGAAATGTAAGAGGCTTATGCCCGGCCAGGCA----AAAGAGAATGAGAAAGCA 7670 || || |||| | | | || | |||||| ||| ||| | | || Sbjct 787 TTTTCACTCGTTGTACTAAGTTACAGCATAGGCAGGCAGGGGAAAACGAACGTG---GCG 843 Query 7671 CCTCTTGTTGCTGACGGTGCAATTATTAAAGAAGTACATATCACCTCGAACAGGGCGGCA 7730 | | ||| | |||| || | |||||||| ||||||| || || ||| | | Sbjct 844 GAT-TGGTTTCAAACGGAGCTTTGATTAAAGAGTTACATATTACTTCTAACCGTTTTGTT 902 Query 7731 GGTAAGGGGAATGAAGATGACTATATTTCAGGTTTATCTACGCAACCCTACAGGAACAGC 7790 || | |||||||||| |||||||| || |||||||| ||| || | || || Sbjct 903 GGGCGGAATAATGAAGATGCTTATATTTCCGGGTTATCTACATTACCTTATCGAAATAGT 962 Query 7791 GTTCCACGGCTACACTCCAATGGAAAATCCGTTGACTGGCTGTCTAAAAAAGGCAATGTA 7850 | || || | || ||||| ||||| ||||||||| | ||||| || |||| Sbjct 963 TTGCCGCGTTTGCATAGTAATGGGAAATCAGTTGACTGGTTATCTAAGCGCGGTAATGCT 1022 Query 7851 AACCTCATATATCCAACGGTTTACAATAAAGCTCATGAAATGGAACTCCATTCTTTGACA 7910 | | || || || || ||||||||||||||||||||| || || | ||| | |||| Sbjct 1023 CATTTGATTTACCCTACCGTTTACAATAAAGCTCATGAATTGCAATTACATGCATTGAAT 1082 Query 7911 AAGATAAAGAATCGTTTTTCCGAACAATCTCGGGAATACAATTACCTACTCGATATTATA 7970 || ||| ||||||||| || || | ||| ||||| || | || || Sbjct 1083 AAATTAATTAATCGTTTTGGTGAGTGCTCCCATGAAGTGAATTATTTAAAGAAGATAATG 1142 Query 7971 TCTTTCTGCAAAGAGAATGGGGTCGTAAGGTTTGAGCAAAAGCTGAAATCCAGATTTTTG 8030 || |||| | ||||| ||||| |||||||||||||| | ||||| | ||| | Sbjct 1143 GATTATTGCATAACTAATGGAGTCGTTAGGTTTGAGCAAAAATTAAAATCTCGCTTTCTT 1202 Query 8031 CAAAAGAATGCGCTCAATTACTGGGGGCTTTCTGATTATTCCATTTTAAATAAGTTACAT 8090 ||||| || || | || ||||| ||||||||| || || |||||| | ||| Sbjct 1203 CAAAAAAACAATCTTATGTATTGGGGTATTTCTGATTTCGGCACATTGAATAAGCTTCAT 1262 Query 8091 TCTGATTTTCTTGAACTTGATAAAAAGTTATCGGTGAATGCTATGGACTTTGAAACTATC 8150 ||||||| || |||||||||||||| ||||| || ||||| ||||| || ||| Sbjct 1263 GATGATTTTATTTCTATTGATAAAAAGTTAATGGTGACGGCAATGGATTTTGATACCATC 1322 Query 8151 AGTGATCATCTTGT--AAGTAGTGGGGTTGTTGAAACCACCCGTGCAGCAAATACTACCG 8208 |||||| ||| | ||| | || |||||||| | | || |||| |||||||| | Sbjct 1323 AGTGATTTCCTTATTAAAGAA--GGCGTTGTTGATAGTATTCGCTCAGCGAATACTACAG 1380 Query 8209 CAATGTATGCAATACAGTGGTTTCACGGTCATGTATTTGACTTCAACAAAAAACAGGTTC 8268 ||||||| || || || ||| | || |||||| | |||||||| || ||||||||||| | Sbjct 1381 CAATGTACGCTATTCAATGGATGCATGGTCATTTCTTTGACTTTAATAAAAAACAGGTGC 1440 Query 8269 AGACACATCGGGCGCGGTTACGAAAAATTGGTATCGACATTGCGCAGAAATGCAATGTTT 8328 | ||||| || || ||||||||||||||||| || || || || || ||||| | Sbjct 1441 AAGTTCATCGCGCCCGTTTACGAAAAATTGGTATTGATATAGCTCAACGTTGTAATGTGT 1500 Query 8329 CTAAATTCTCTCCTGTGATTGT 8350 | ||||| ||||||| |||| Sbjct 1501 CGAAATTTACTCCTGTATTTGT 1522 Score = 80.6 bits (88), Expect = 1e-11 Identities = 53/59 (90%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 5052 CGCGAAGCGGTTCGGGGTTCTGTGACACCCGAACTTTACCGTGGTTTCCCACGGTATTT 5110 |||| ||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 27 CGCGTAGCGGTTCGGGGTTCTGTGACACCCGAACTTTACCGTGGAAAGCCACGGTAATT 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 26936397505536