Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diuraphis_20noxia_20[refseq_20GCF_5F001186385.1_202015-07-23] 5,637 sequences; 395,073,589 total letters Query= NC_005040.1 Length=5499 Score E Sequences producing significant alignments: (Bits) Value seq921 192 2e-45 seq290 107 7e-20 seq276 95.1 4e-16 seq119 91.5 5e-15 >seq921 Length=90463 Score = 192 bits (212), Expect = 2e-45 Identities = 219/295 (74%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 2160 ATTGAATTTTTAACAA-CACTATATAATGTCATAGACAAAAGAGTTCCGAAATTAAATAG 2218 ||| ||||||| |||| || | |||||| | | || |||| |||| ||| ||||| Sbjct 26609 ATTTAATTTTTTACAAACATTGTATAATATAGTTGATAAAAATATTCCAAAACTAAATTC 26550 Query 2219 TATATGTATAAAAAGTCCCCCTTCGGCAGGTAAGAACttttttttCGATGCCGTTGCATC 2278 | | |||||| | || | || || || || || || | |||||| ||||| || | || Sbjct 26549 TTTGTGTATATATAGCGCGCCATCCGCGGGAAAAAATTATTTTTTTGATGCAGTAKCGTC 26490 Query 2279 GTATTTGCTTTCATATGGTATGTTCGGTACAGCCAATAAAAACAATAATTTTTCGTGGGC 2338 | ||| || || ||||| |||||||| || |||||||| ||||||||| | ||||| Sbjct 26489 TTTTTTCATTAATTACGGTATRTTCGGTACGGCTAATAAAAATAATAATTTTACTTGGGC 26430 Query 2339 AGACGGAGCGGGTAAACGATTAGTTCTATGGAACGAACCAAACTATGAACAATACCATAT 2398 ||||| ||||| |||||| | || | |||||||||||||| ||||||||||| ||||| Sbjct 26429 TGACGGTGCGGGCAAACGAATTGTAATTTGGAACGAACCAAATTATGAACAATATCATAT 26370 Query 2399 AGAAAAAATAAAAGAACTTTTGGGGGGAGATACAACAAGAATACATGTAAAATAT 2453 ||||||| ||||| | | || || ||||| ||| | | ||||| |||||| Sbjct 26369 CAAAAAAATGAAAGAGTTATWAGGTGGTGATACCACACGTGTTCATGTTAAATAT 26315 >seq290 Length=403429 Score = 107 bits (118), Expect = 7e-20 Identities = 185/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 2244 GCAGGTAAGAACttttttttCGATGCCGTTGCATCGTATTTGCTTTCAT-ATGGTATGTT 2302 || || || || | ||||||||||||||| || | | ||| || || | |||||||| Sbjct 357967 GCGGGCAAAAATTATTTTTTCGATGCCGTAGCCGCCTTTTT--TTGAATTACGGTATGTT 357910 Query 2303 CGGTACAGCCAATAAAAACAATAATTTTTCGTGGGCAGACGGAGCGGGTAAACGATTAGT 2362 ||| || ||||| ||| |||||||| | | || || || || ||||| | || Sbjct 357909 CGGAACTGCCAACAAACCGAATAATTTCAGTTTTTCTGATGGCGCCGGCAAACGTCTCGT 357850 Query 2363 TCTATGGAACGAACCAAACTATGAACAATACCATATAGAAAAAATAAAAGAACTTTTGGG 2422 | ||||||||||| || || || |||||| | |||||||| || ||| | || || Sbjct 357849 AATTTGGAACGAACCTAATTACGAGGTGTACCATTTGGAAAAAATGAAGGAAYTATTAGG 357790 Query 2423 GGGAGATACAACAAGAATACATGTAAAATATGCAAACGACGTTAGTGTGCAAAGGGTACC 2482 || ||||| || ||| | ||||| ||||| |||||| || | ||| || || Sbjct 357789 AGGGGATACCACTAGAGTGCATGTTAAATACAAAAACGATRTTCCACTACAAGGGCCTCC 357730 Query 2483 CATTATTATATTAACAAATAACCACTTG 2510 ||| || |||| || ||| || | ||| Sbjct 357729 CATAATATTATTGACCAATCACTATTTG 357702 >seq276 Length=394065 Score = 95.1 bits (104), Expect = 4e-16 Identities = 137/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 925 CTGTAGATGTAGTTTCTTACTCAACGCCGCTGCTTTCCAACTATGTAGACGACGACGCAT 984 |||||||||| ||||| |||| ||| |||| |||| |||||||| |||| | || Sbjct 287104 CTGTAGATGTTCGTTCTTGAGCAACTCCGGAGCTTACCAAATATGTAGAAGACGCAGAAT 287163 Query 985 TCGAAAGAATGTTAGAGTCATCCAACTATCAGAAAGAGACTGGTCCCGTATCTTTCAATA 1044 | |||| |||||||||| || | | | | | ||||||| | || ||| |||| Sbjct 287164 TTGAAAAAATGTTAGAGAAGTCAAGTTGTTKGGAGAAGACTGGGTCAACAT-TTTAAATA 287222 Query 1045 CTTATGTTCATCGCCCAGGAATGTCAAAGAAGTGGGCGGCCAGTACTTTGATGGAGGATT 1104 ||||||| || ||||| || | ||||| |||||||| | | | |||||| | || | Sbjct 287223 CTTATGTACACCGCCCTGGCAAATCAAATAAGTGGGCAGTCCCCAATTTGATATAAGACT 287282 Query 1105 ACGTAGTAGATA 1116 |||| |||||| Sbjct 287283 ACGTGATAGATA 287294 Score = 89.7 bits (98), Expect = 2e-14 Identities = 190/286 (66%), Gaps = 15/286 (5%) Strand=Plus/Minus Query 845 ATGCCAAAATGCATGTACGTCGTCAGCGAACACGGCGACCACGTCCACGTCGTACACACC 904 || || ||| | ||||| |||| |||||||||| |||||| |||||| | |||||| Sbjct 288042 ATACCTAAAGGATTGTACATCGTTAGCGAACACGACGACCATGTCCACAACACACACACA 287983 Query 905 --------------TGTAACTACGCCACGGGCAGCTGTAGATGTAGTTTCTTACTCAACG 950 || | ||| ||| || ||||| |||| ||||| ||| Sbjct 287982 CACACACACACACATGCACGTACAACACAGGAGCCTGTAAATGTTCGTTCTTGGGCAAAC 287923 Query 951 CCGCTGCTTTCCAACTATGTAGACGACGACGCATTCGAAAGAATGTTAGAGTCATCCAAC 1010 ||| |||| |||| |||||||| || | | ||| |||| |||||| ||| || | Sbjct 287922 CCGGAGCTTACCAAATATGTAGAAGATGCAGAATTTGAAAAAATGTTCGAGAAGTCAAGT 287863 Query 1011 TATCAGAAAGAGACTGGTCCCGTATCTTTCAATACTTATGTTCATCGCCCAGGAATGTCA 1070 | || | | ||||||| | || ||| ||||||||||| || |||| || | ||| Sbjct 287862 TGTCGGGAGAAGACTGGGTCAACAT-TTTAAATACTTATGTACACCGCCYTGGCAAATCA 287804 Query 1071 AAGAAGTGGGCGGCCAGTACTTTGATGGAGGATTACGTAGTAGATA 1116 || |||||||| | | | |||||| | || ||||| |||||| Sbjct 287803 AATAAGTGGGCAGTCCCCAATTTGATATAAGACTACGTGATAGATA 287758 >seq119 Length=668897 Score = 91.5 bits (100), Expect = 5e-15 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 2256 ttttttttCGATGCCGTTGCATCGTATTTGCTTTCATATGGTATGTTCGGTACAGCCAAT 2315 |||| ||| ||||||||||| | | ||| | || ||| ||| ||||| || ||| Sbjct 165970 TTTTWTTTTGATGCCGTTGCTGCTTTTTTTAAAT--TACGGTCAGTTAGGTACCGCTAAT 166027 Query 2316 AAAAACAATAATTTTTCGTGGGCAGACGGAGCGGGTAAACGATTAGTTCTATGGAACGAA 2375 |||| | |||||| | | ||| | || | |||||| |||||||| ||||||||| Sbjct 166028 AAAACTGACAATTTTGCATTTCAAGAGGCAGTCGATAAACGTTTAGTTCTTTGGAACGAA 166087 Query 2376 CCAAACTATGAACAATACCATATAGAAAAAATAAAAGAACTTTTGGGGGGAGATACAACA 2435 ||||| || ||| | ||||||||| || | |||||| | | | || || |||||| Sbjct 166088 CCAAATTACGAATCTTCTCATATAGAACAACTTAAAGAATTACTTGCCGGCGACACAACA 166147 Query 2436 AGAATACATGTAAAATAT 2453 | || || | |||||| Sbjct 166148 CGTATTCAAATTAAATAT 166165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 17483721980120