Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20grimshawi_20[refseq_20GCF_5F000005155.2_202006-06-30] 17,440 sequences; 200,467,819 total letters Query= NC_030296.1 Length=5071 Score E Sequences producing significant alignments: (Bits) Value seq15171 132 2e-27 seq16796 127 7e-26 >seq15171 Length=5937 Score = 132 bits (146), Expect = 2e-27 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 1927 TaaaaaaaaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGA 1986 |||||||||||| ||||| | || || || ||||||| || ||||||| ||| ||||| Sbjct 3653 TAAAAAAAATACAATTTTTATACTTTCTGCACCGAATGCGGGAAAAAATTATTTTTTCGA 3594 Query 1987 TTGCATTGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAA 2046 || | |||||| || || |||||||||| || |||||||||||| || Sbjct 3593 TTCGTTCATACATTATTGCTTAAATTTCGGTCAAATGGGTAATTTTAATCGATATTGTTC 3534 Query 2047 TTTCCCTTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCACAAGCTGA 2106 ||| || ||| ||||||||| | || || ||| || | |||||||||||| || Sbjct 3533 TTTTCCATTAATGGAGTGTGTTGATAAGCGAATTATTTTATGGAACGAACCAGTTCTGGA 3474 Query 2107 GCCTAGTGCTTTTGAAACTCTGAAAACGTTACTCGGAGGCGAT 2149 | | ||||| ||||||| | |||| |||| ||||||||||| Sbjct 3473 GGCCAGTGCGAGTGAAACTTTAAAAATGTTATTCGGAGGCGAT 3431 >seq16796 Length=9755 Score = 127 bits (140), Expect = 7e-26 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 1927 TaaaaaaaaTACCTTTTTTGTTCTCTCCCCATCGAATGCTGGCAAAAATTTTTTCTTCGA 1986 ||| |||||||| ||||| | || || || ||||||| || ||||||| ||| ||||| Sbjct 3260 TAAGAAAAATACAATTTTTATACTTTCGGCACCGAATGCGGGAAAAAATTATTTTTTCGA 3201 Query 1987 TTGCATTGTACATTTTTATTTGAATTTCGGTCTGATCGGTAATTTTAATAAGTACCAAAA 2046 || || |||||| || || |||||||||| || |||||||||||| || Sbjct 3200 TTCGTTTATACATTATTGCTTAAATTTCGGTCAAATGGGTAATTTTAATCGATATTGTTC 3141 Query 2047 TTTCCCTTTACAAGAGTGTGTTCACAAACGTATTCTTCTGTGGAACGAACCACAAGCTGA 2106 ||| || ||| ||||||||| | || || ||| || | ||||| |||||| || Sbjct 3140 TTTTCCATTAATGGAGTGTGTTGATAAGCGAATTATTTTATGGAATGAACCAGTTCTGGA 3081 Query 2107 GCCTAGTGCTTTTGAAACTCTGAAAACGTTACTCGGAGGCGAT 2149 | | ||||| ||||||| | |||| |||| ||||||||||| Sbjct 3080 GGCCAGTGCGAGTGAAACTTTAAAAATGTTATTCGGAGGCGAT 3038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16112126025600